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<HTML>
<HEAD>
<TITLE>
EMBOSS
</TITLE>
</HEAD>
<BODY BGCOLOR="#FFFFFF" text="#000000">
<table align=center border=0 cellspacing=0 cellpadding=0>
<tr><td valign=top>
<A HREF="/" ONMOUSEOVER="self.status='Go to the EMBOSS home page';return true"><img border=0 src="emboss_icon.jpg" alt="" width=150 height=48></a>
</td>
<td align=left valign=middle>
<b><font size="+6">
EDIT
</font></b>
</td></tr>
</table>
<br>
<p>
<!--END OF HEADER-->
Data file and content editing
<p>
<table border cellpadding=4 bgcolor="#FFFFF0">
<tr><th>Program name</th><th>Description</th></tr>
<tr>
<td><a href="aligncopy.html">aligncopy</a></td>
<td>
Read and write alignments
</td>
</tr>
<tr>
<td><a href="aligncopypair.html">aligncopypair</a></td>
<td>
Read and write pairs from alignments
</td>
</tr>
<tr>
<td><a href="biosed.html">biosed</a></td>
<td>
Replace or delete sequence sections
</td>
</tr>
<tr>
<td><a href="codcopy.html">codcopy</a></td>
<td>
Copy and reformat a codon usage table
</td>
</tr>
<tr>
<td><a href="cutseq.html">cutseq</a></td>
<td>
Remove a section from a sequence
</td>
</tr>
<tr>
<td><a href="degapseq.html">degapseq</a></td>
<td>
Remove non-alphabetic (e.g. gap) characters from sequences
</td>
</tr>
<tr>
<td><a href="descseq.html">descseq</a></td>
<td>
Alter the name or description of a sequence
</td>
</tr>
<tr>
<td><a href="entret.html">entret</a></td>
<td>
Retrieve sequence entries from flatfile databases and files
</td>
</tr>
<tr>
<td><a href="extractalign.html">extractalign</a></td>
<td>
Extract regions from a sequence alignment
</td>
</tr>
<tr>
<td><a href="extractfeat.html">extractfeat</a></td>
<td>
Extract features from sequence(s)
</td>
</tr>
<tr>
<td><a href="extractseq.html">extractseq</a></td>
<td>
Extract regions from a sequence
</td>
</tr>
<tr>
<td><a href="featcopy.html">featcopy</a></td>
<td>
Read and write a feature table
</td>
</tr>
<tr>
<td><a href="featmerge.html">featmerge</a></td>
<td>
Merge two overlapping feature tables
</td>
</tr>
<tr>
<td><a href="featreport.html">featreport</a></td>
<td>
Read and write a feature table
</td>
</tr>
<tr>
<td><a href="feattext.html">feattext</a></td>
<td>
Return a feature table original text
</td>
</tr>
<tr>
<td><a href="listor.html">listor</a></td>
<td>
Write a list file of the logical OR of two sets of sequences
</td>
</tr>
<tr>
<td><a href="makenucseq.html">makenucseq</a></td>
<td>
Create random nucleotide sequences
</td>
</tr>
<tr>
<td><a href="makeprotseq.html">makeprotseq</a></td>
<td>
Create random protein sequences
</td>
</tr>
<tr>
<td><a href="maskambignuc.html">maskambignuc</a></td>
<td>
Mask all ambiguity characters in nucleotide sequences with N
</td>
</tr>
<tr>
<td><a href="maskambigprot.html">maskambigprot</a></td>
<td>
Mask all ambiguity characters in protein sequences with X
</td>
</tr>
<tr>
<td><a href="maskfeat.html">maskfeat</a></td>
<td>
Write a sequence with masked features
</td>
</tr>
<tr>
<td><a href="maskseq.html">maskseq</a></td>
<td>
Write a sequence with masked regions
</td>
</tr>
<tr>
<td><a href="newseq.html">newseq</a></td>
<td>
Create a sequence file from a typed-in sequence
</td>
</tr>
<tr>
<td><a href="nohtml.html">nohtml</a></td>
<td>
Remove mark-up (e.g. HTML tags) from an ASCII text file
</td>
</tr>
<tr>
<td><a href="noreturn.html">noreturn</a></td>
<td>
Remove carriage return from ASCII files
</td>
</tr>
<tr>
<td><a href="nospace.html">nospace</a></td>
<td>
Remove whitespace from an ASCII text file
</td>
</tr>
<tr>
<td><a href="notab.html">notab</a></td>
<td>
Replace tabs with spaces in an ASCII text file
</td>
</tr>
<tr>
<td><a href="notseq.html">notseq</a></td>
<td>
Write to file a subset of an input stream of sequences
</td>
</tr>
<tr>
<td><a href="nthseq.html">nthseq</a></td>
<td>
Write to file a single sequence from an input stream of sequences
</td>
</tr>
<tr>
<td><a href="nthseqset.html">nthseqset</a></td>
<td>
Read and write (return) one set of sequences from many
</td>
</tr>
<tr>
<td><a href="pasteseq.html">pasteseq</a></td>
<td>
Insert one sequence into another
</td>
</tr>
<tr>
<td><a href="revseq.html">revseq</a></td>
<td>
Reverse and complement a nucleotide sequence
</td>
</tr>
<tr>
<td><a href="seqcount.html">seqcount</a></td>
<td>
Read and count sequences
</td>
</tr>
<tr>
<td><a href="seqret.html">seqret</a></td>
<td>
Read and write (return) sequences
</td>
</tr>
<tr>
<td><a href="seqretsetall.html">seqretsetall</a></td>
<td>
Read and write (return) many sets of sequences
</td>
</tr>
<tr>
<td><a href="seqretsplit.html">seqretsplit</a></td>
<td>
Read sequences and write them to individual files
</td>
</tr>
<tr>
<td><a href="sizeseq.html">sizeseq</a></td>
<td>
Sort sequences by size
</td>
</tr>
<tr>
<td><a href="skipredundant.html">skipredundant</a></td>
<td>
Remove redundant sequences from an input set
</td>
</tr>
<tr>
<td><a href="skipseq.html">skipseq</a></td>
<td>
Read and write (return) sequences, skipping first few
</td>
</tr>
<tr>
<td><a href="splitsource.html">splitsource</a></td>
<td>
Split sequence(s) into original source sequences
</td>
</tr>
<tr>
<td><a href="splitter.html">splitter</a></td>
<td>
Split sequence(s) into smaller sequences
</td>
</tr>
<tr>
<td><a href="trimest.html">trimest</a></td>
<td>
Remove poly-A tails from nucleotide sequences
</td>
</tr>
<tr>
<td><a href="trimseq.html">trimseq</a></td>
<td>
Remove unwanted characters from start and end of sequence(s)
</td>
</tr>
<tr>
<td><a href="trimspace.html">trimspace</a></td>
<td>
Remove extra whitespace from an ASCII text file
</td>
</tr>
<tr>
<td><a href="union.html">union</a></td>
<td>
Concatenate multiple sequences into a single sequence
</td>
</tr>
<tr>
<td><a href="vectorstrip.html">vectorstrip</a></td>
<td>
Remove vectors from the ends of nucleotide sequence(s)
</td>
</tr>
<tr>
<td><a href="yank.html">yank</a></td>
<td>
Add a sequence reference (a full USA) to a list file
</td>
</tr>
<tr>
<td><a href="../embassy/domsearch/seqfraggle.html">seqfraggle</a></td>
<td>
Remove fragment sequences from DHF files
</td>
</tr>
</table>
</BODY>
</HTML>
|
