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<HTML>
<HEAD>
<TITLE>
EMBOSS
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<A HREF="/" ONMOUSEOVER="self.status='Go to the EMBOSS home page';return true"><img border=0 src="emboss_icon.jpg" alt="" width=150 height=48></a>
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<b><font size="+6">
PHYLOGENY DISCRETE CHARACTERS
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</table>
<br>
<p>
<!--END OF HEADER-->
Phylogenetic discrete character methods
<p>
<table border cellpadding=4 bgcolor="#FFFFF0">
<tr><th>Program name</th><th>Description</th></tr>
<tr>
<td><a href="../embassy/phylip/eclique.html">eclique</a></td>
<td>
Largest clique program
</td>
</tr>
<tr>
<td><a href="../embassy/phylip/edollop.html">edollop</a></td>
<td>
Dollo and polymorphism parsimony algorithm
</td>
</tr>
<tr>
<td><a href="../embassy/phylip/edolpenny.html">edolpenny</a></td>
<td>
Penny algorithm Dollo or polymorphism
</td>
</tr>
<tr>
<td><a href="../embassy/phylip/efactor.html">efactor</a></td>
<td>
Multistate to binary recoding program
</td>
</tr>
<tr>
<td><a href="../embassy/phylip/emix.html">emix</a></td>
<td>
Mixed parsimony algorithm
</td>
</tr>
<tr>
<td><a href="../embassy/phylip/epenny.html">epenny</a></td>
<td>
Penny algorithm, branch-and-bound
</td>
</tr>
<tr>
<td><a href="../embassy/phylipnew/fclique.html">fclique</a></td>
<td>
Largest clique program
</td>
</tr>
<tr>
<td><a href="../embassy/phylipnew/fdollop.html">fdollop</a></td>
<td>
Dollo and polymorphism parsimony algorithm
</td>
</tr>
<tr>
<td><a href="../embassy/phylipnew/fdolpenny.html">fdolpenny</a></td>
<td>
Penny algorithm Dollo or polymorphism
</td>
</tr>
<tr>
<td><a href="../embassy/phylipnew/ffactor.html">ffactor</a></td>
<td>
Multistate to binary recoding program
</td>
</tr>
<tr>
<td><a href="../embassy/phylipnew/fmix.html">fmix</a></td>
<td>
Mixed parsimony algorithm
</td>
</tr>
<tr>
<td><a href="../embassy/phylipnew/fmove.html">fmove</a></td>
<td>
Interactive mixed method parsimony
</td>
</tr>
<tr>
<td><a href="../embassy/phylipnew/fpars.html">fpars</a></td>
<td>
Discrete character parsimony
</td>
</tr>
<tr>
<td><a href="../embassy/phylipnew/fpenny.html">fpenny</a></td>
<td>
Penny algorithm, branch-and-bound
</td>
</tr>
</table>
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