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<HTML>
<HEAD>
<TITLE>
EMBOSS
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<A HREF="/" ONMOUSEOVER="self.status='Go to the EMBOSS home page';return true"><img border=0 src="emboss_icon.jpg" alt="" width=150 height=48></a>
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<td align=left valign=middle>
<b><font size="+6">
UTILS DATABASE CREATION
</font></b>
</td></tr>
</table>
<br>
<p>
<!--END OF HEADER-->
Database installation
<p>
<table border cellpadding=4 bgcolor="#FFFFF0">
<tr><th>Program name</th><th>Description</th></tr>
<tr>
<td><a href="aaindexextract.html">aaindexextract</a></td>
<td>
Extract amino acid property data from AAINDEX
</td>
</tr>
<tr>
<td><a href="cutgextract.html">cutgextract</a></td>
<td>
Extract codon usage tables from CUTG database
</td>
</tr>
<tr>
<td><a href="jaspextract.html">jaspextract</a></td>
<td>
Extract data from JASPAR
</td>
</tr>
<tr>
<td><a href="printsextract.html">printsextract</a></td>
<td>
Extract data from PRINTS database for use by pscan
</td>
</tr>
<tr>
<td><a href="prosextract.html">prosextract</a></td>
<td>
Process the PROSITE motif database for use by patmatmotifs
</td>
</tr>
<tr>
<td><a href="rebaseextract.html">rebaseextract</a></td>
<td>
Process the REBASE database for use by restriction enzyme applications
</td>
</tr>
<tr>
<td><a href="tfextract.html">tfextract</a></td>
<td>
Process TRANSFAC transcription factor database for use by tfscan
</td>
</tr>
<tr>
<td><a href="../embassy/domainatrix/cathparse.html">cathparse</a></td>
<td>
Generate DCF file from raw CATH files
</td>
</tr>
<tr>
<td><a href="../embassy/domainatrix/domainnr.html">domainnr</a></td>
<td>
Remove redundant domains from a DCF file
</td>
</tr>
<tr>
<td><a href="../embassy/domainatrix/domainseqs.html">domainseqs</a></td>
<td>
Add sequence records to a DCF file
</td>
</tr>
<tr>
<td><a href="../embassy/domainatrix/domainsse.html">domainsse</a></td>
<td>
Add secondary structure records to a DCF file
</td>
</tr>
<tr>
<td><a href="../embassy/domainatrix/scopparse.html">scopparse</a></td>
<td>
Generate DCF file from raw SCOP files
</td>
</tr>
<tr>
<td><a href="../embassy/domainatrix/ssematch.html">ssematch</a></td>
<td>
Search a DCF file for secondary structure matches
</td>
</tr>
<tr>
<td><a href="../embassy/domalign/allversusall.html">allversusall</a></td>
<td>
Sequence similarity data from all-versus-all comparison
</td>
</tr>
<tr>
<td><a href="../embassy/domsearch/seqnr.html">seqnr</a></td>
<td>
Remove redundancy from DHF files
</td>
</tr>
<tr>
<td><a href="../embassy/structure/domainer.html">domainer</a></td>
<td>
Generate domain CCF files from protein CCF files
</td>
</tr>
<tr>
<td><a href="../embassy/structure/hetparse.html">hetparse</a></td>
<td>
Convert heterogen group dictionary to EMBL-like format
</td>
</tr>
<tr>
<td><a href="../embassy/structure/pdbparse.html">pdbparse</a></td>
<td>
Parse PDB files and writes protein CCF files
</td>
</tr>
<tr>
<td><a href="../embassy/structure/pdbplus.html">pdbplus</a></td>
<td>
Add accessibility and secondary structure to a CCF file
</td>
</tr>
<tr>
<td><a href="../embassy/structure/pdbtosp.html">pdbtosp</a></td>
<td>
Convert swissprot:PDB codes file to EMBL-like format
</td>
</tr>
<tr>
<td><a href="../embassy/structure/sites.html">sites</a></td>
<td>
Generate residue-ligand CON files from CCF files
</td>
</tr>
</table>
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