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<HTML>
<HEAD>
<TITLE>
EMBOSS
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<table align=center border=0 cellspacing=0 cellpadding=0>
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<A HREF="/" ONMOUSEOVER="self.status='Go to the EMBOSS home page';return true"><img border=0 src="emboss_icon.jpg" alt="" width=150 height=48></a>
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<td align=left valign=middle>
<b><font size="+6">
UTILS DATABASE INDEXING
</font></b>
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</table>
<br>
<p>
<!--END OF HEADER-->
Database indexing
<p>
<table border cellpadding=4 bgcolor="#FFFFF0">
<tr><th>Program name</th><th>Description</th></tr>
<tr>
<td><a href="dbiblast.html">dbiblast</a></td>
<td>
Index a BLAST database
</td>
</tr>
<tr>
<td><a href="dbifasta.html">dbifasta</a></td>
<td>
Index a fasta file database
</td>
</tr>
<tr>
<td><a href="dbiflat.html">dbiflat</a></td>
<td>
Index a flat file database
</td>
</tr>
<tr>
<td><a href="dbigcg.html">dbigcg</a></td>
<td>
Index a GCG formatted database
</td>
</tr>
<tr>
<td><a href="dbxcompress.html">dbxcompress</a></td>
<td>
Compress an uncompressed dbx index
</td>
</tr>
<tr>
<td><a href="dbxedam.html">dbxedam</a></td>
<td>
Index the EDAM ontology using b+tree indices
</td>
</tr>
<tr>
<td><a href="dbxfasta.html">dbxfasta</a></td>
<td>
Index a fasta file database using b+tree indices
</td>
</tr>
<tr>
<td><a href="dbxflat.html">dbxflat</a></td>
<td>
Index a flat file database using b+tree indices
</td>
</tr>
<tr>
<td><a href="dbxgcg.html">dbxgcg</a></td>
<td>
Index a GCG formatted database using b+tree indices
</td>
</tr>
<tr>
<td><a href="dbxobo.html">dbxobo</a></td>
<td>
Index an obo ontology using b+tree indices
</td>
</tr>
<tr>
<td><a href="dbxreport.html">dbxreport</a></td>
<td>
Validate index and report internals for dbx databases
</td>
</tr>
<tr>
<td><a href="dbxresource.html">dbxresource</a></td>
<td>
Index a data resource catalogue using b+tree indices
</td>
</tr>
<tr>
<td><a href="dbxstat.html">dbxstat</a></td>
<td>
Dump statistics for dbx databases
</td>
</tr>
<tr>
<td><a href="dbxtax.html">dbxtax</a></td>
<td>
Index NCBI taxonomy using b+tree indices
</td>
</tr>
<tr>
<td><a href="dbxuncompress.html">dbxuncompress</a></td>
<td>
Uncompress a compressed dbx index
</td>
</tr>
</table>
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