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#!/usr/bin/perl -w
print "<div id=\"table\">
<table cellpadding =\"5\">
<tr><th>LIBRARY</th> <th>DATATYPES</th> <th>FUNCTIONS</th> <th>NOTES</th> </tr>
";
%ignorefiles = (
"index" => "indexfile",
);
%knownfiles = (
"embaln" => "Alignments",
"embcom" => "Complexity algorithms",
"embcons" => "Consensus sequences",
"embdata" => "Data file utilities",
"embdbi" => "Database indexing using EMBL-CD indices",
"embdmx" => "Domainatrix package algorithms",
"embdomain" => "Domain algorithms",
"embest" => "EST algorithms",
"embexit" => "Exit calls for applications",
"embgroup" => "Groups of applications",
"embiep" => "Isoelectric point utilities",
"embindex" => "Indexing databases using B+ trees",
"embinit" => "Initialising internals",
"embmat" => "Comparison matrices",
"embmisc" => "Miscellaneos methods",
"embmol" => "Molecular fragment algorithms",
"embnmer" => "N-mer (word) algorithms",
"embpat" => "Pattern matching algorithms",
"embpatlist" => "Pattern list file reading",
"embpdb" => "Protein databank (PDB) structure file utilities",
"embprop" => "Properties of protein sequences",
"embread" => "Reading data files",
"embshow" => "Showing sequences in pretty formats",
"embsig" => "Signatures of protein domains",
"embword" => "Word matching algorithms",
"embxyz" => "XYZ 3D coordinate algorithms",
);
opendir(DIR, ".");
while ($file = readdir(DIR)) {
if($file =~ /^[.]/) {next}
if(-d $file) {next}
if($file =~ /[~]$/) {next}
if($file =~ /[.]inc$/) {next}
if($file =~ /^(.*)_static[.]html$/) {next}
elsif($file =~ /^(.*)[.]html$/) {
$fpref=$1;
if($ignorefiles{$fpref}) {next}
}
else {
print "+++ unknown file type $file\n";
next;
}
$empty=0;
open (HTML, "$file");
while (<HTML>) {
if (/No public datatype definitions in source file/) {$empty=1}
}
# print "$file ($fpref)\n";
close (HTML);
open (DD, "../datadef/$file");
$emptyd = 0;
while (<DD>) {
if(/No public datatype definitions in source file/) {$emptyd=1}
}
close (DD);
if(!defined($knownfiles{$fpref})) {
print STDERR "Unknown file: $fpref\n";
}
else {
$out = "\n<tr><td><b><i>$knownfiles{$fpref}</b></i></td>\n";
if(!$emptyd) {
$out .= "<td><a href=\"../datadef/$fpref.html\">Datatypes</a></td>\n";
}
else {
$out .= "<td> </td>\n";
}
if(!$empty) {
$out .= "<td><a href=\"$fpref.html\">Functions</a></td>\n";
}
else {
$out .= "<td> </td>\n";
}
$label = uc($fpref);
$label =~ s/^AJ//;
$out .= "<td><a href=\"#$label\">Notes</a></td></tr>\n";
$out{$fpref} = $out;
}
}
closedir(DIR);
foreach $x(keys(%knownfiles)) {
if(defined($out{$x})) {
print $out{$x};
}
else {
$fpref = $x;
open (DD, "../datadef/$fpref.html");
$emptyd = 0;
while (<DD>) {
if(/No public datatype definitions in source file/) {$emptyd=1}
}
close (DD);
$out = print "<tr><td><b><i>$knownfiles{$fpref}</b></i></td>\n";
if(!$emptyd) {
$out .= "<td><a href=\"../datadef/$fpref.html\">Datatypes</a></td>\n";
}
else {
$out .= "<td> </td>\n";
}
# we know there are no documented public functions!
$out .= "<td> </td>\n";
$label = uc($fpref);
$label =~ s/^AJ//;
$out .= "<td><a href=\"#$label\">Notes</a></td></tr>\n";
$out{$fpref} = $out;
print $out{$x};
}
}
print "</table>\n";
|
