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|
#!/usr/bin/perl -w
#
# Test groups.standard top level topic v. tpoic relations
# need at least one match to eeach group
# or some overall group marked by 0000003 as the top level
$dotest = 1;
$testgroup = "";
foreach $test (@ARGV) {
$testgroup = lc($test);
$testgroup =~ s/ /_/g;
$testgroup{$testgroup} = 1;
}
open (VERSION, "embossversion -full -filter|") ||
die "Cannot run embossversion";
while (<VERSION>){
if(/RootDirectory: (\S+)/) {
$rootdir = $1;
}
if(/Emboss_Standard: (\S+)/) {
$standarddir = $1;
}
}
close VERSION;
open (GROUPS, "$rootdir/acd/groups.standard") ||
die "Cannot find groups.standard";
while(<GROUPS>){
if(/^#/) {next}
if(/^EDAM:(\d+)\s+(\S+) +(.*)/){
$term = $1;
$group = $2;
$desc = $3;
$group = lc($group);
$group =~ s/:/_/g;
$term{$group} = $term;
}
}
close GROUPS;
$dotest = 0;
$lastgroup = "";
open (WOSSNAME, "wossname -filter|") ||
die "Cannot run wossname";
while(<WOSSNAME>){
if(/^([A-Z0-9 ]+)$/) {
$group = $1;
$group = lc($group);
$group =~ s/ /_/g;
if($dotest && $lastgroup ne ""){
print "\nGroup: $lastgroup $nprogs ($gterm)\n";
if(scalar(keys(%topic))) {
$getanc = "{";
foreach $e (sort {$topic{$a} <=> $topic{$b}} (keys(%topic))){
printf "%3d %s %s\n", $topic{$e}, $e, $edam{$e};
$getanc .= "$e,";
}
# if($gterm ne "0000003") {
# $getanc .= "$gterm}";
# } else {
$getanc =~ s/,$/\}/;
# }
# print "ontogetcommon edam:$getanc -obsolete -filter -oformat excel\n";
open (ANC, "ontogetcommon 'edam:$getanc' -obsolete -filter -oformat excel|") ||
die "Failed to run ontogetcommon \"edam:$getanc\"";
while(<ANC>){
print "$_";
if (/^$gterm/) {print "+++++++\n"}
if (!$groupok && /^0000003/) {print "-------\n"}
}
close ANC;
}
else {print "+++No topics in group+++\n"}
# foreach $e (sort {$oper{$a} <=> $oper{$b}} (keys(%oper))){
# printf "oper %3d %s %s\n", $oper{$e}, $e, $edam{$e};
# }
}
$lastgroup = $group;
%topic = ();
%oper = ();
$nprogs = 0;
if(defined($term{$lastgroup}) && $term{$lastgroup} ne "0000003") {
$gterm = "$term{$lastgroup}";
} else {
$gterm = "0000003";
}
if($testgroup ne "" && !$testgroup{$lastgroup}) {
$lastgroup = $group;
$dotest=0;
next;
}
$dotest = 1;
$groupok = 1;
}
elsif(!$dotest) {next}
elsif(/^(\S+)\s+(.*)/){
$prog = $1;
$desc = $2;
$acd = "$standarddir/acd/$prog.acd";;
open (ACD, "$acd") || die "Cannot open '$acd'";
$nprogs++;
$app = 0;
$topicok = 0;
$topicwarn = 0;
$topicmsg = "";
while(<ACD>){
if(/^ *application:/){$app=1}
if($app) {
if(/^ *]/){$app=0}
if(/relations: +\"([^\"]+)\"/) {
$rel = $1;
if($rel =~ /^EDAM:(\d+) (\S+) (.*)/) {
$term = $1;
$namespace = $2;
$name = $3;
if($namespace eq "topic"){
$topic{$term}++;
$edam{$term} = $name;
# print "ontogetcommon \"edam:{$gterm,$term}\"\n";
open (ANC, "ontogetcommon \"edam:{$gterm,$term}\" -obsolete -filter -oformat excel|") ||
die "Failed to run ontogetcommon \"edam:{$gterm,$term}\"";
while(<ANC>){
if (/^$gterm/) {
$topicok = 1;
# $topicmsg .= "$gterm $prog FOUND match to EDAM:$term $namespace $name\n"
} else {
if(! /^0000003 /) {
$topicmsg .= "$gterm $prog no match to EDAM:$term $namespace $name\n";
$topicwarn++;
}
}
}
close ANC;
}
elsif($namespace eq "operation"){
$oper{$term}++;
$edam{$term} = $name;
}
}
else {
print STDERR "$prog bad relation '$rel'\n";
}
}
}
}
close ACD;
if(!$topicok) {print "$topicmsg";$groupok = 0;}
elsif($topicmsg ne "") {print "OK $prog but $topicwarn warnings:\n"}
}
}
if($dotest && $lastgroup ne ""){
print "\nGroup: $lastgroup $nprogs ($gterm)\n";
foreach $e (sort {$topic{$a} <=> $topic{$b}} (keys(%topic))){
printf "%3d %s %s\n", $topic{$e}, $e, $edam{$e};
}
$getanc = "{";
foreach $e (sort {$topic{$a} <=> $topic{$b}} (keys(%topic))){
printf "%3d %s %s\n", $topic{$e}, $e, $edam{$e};
$getanc .= "$e,";
}
# if($gterm ne "0000003") {
# $getanc .= "$gterm}";
# } else {
$getanc =~ s/,$/\}/;
# }
# print "ontogetcommon edam:$getanc -obsolete -filter -oformat excel\n";
open (ANC, "ontogetcommon 'edam:$getanc' -obsolete -filter -oformat excel|") ||
die "Failed to run ontogetcommon \"edam:$getanc\"";
while(<ANC>){
print "$_";
if (/^$gterm/) {print "+++++++\n"}
if (!$groupok && /^0000003/) {print "-------\n"}
}
close ANC;
# foreach $e (sort {$oper{$a} <=> $oper{$b}} (keys(%oper))){
# printf "oper %3d %s %s\n", $oper{$e}, $e, $edam{$e};
# }
}
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