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|
#!/usr/bin/perl -w
$file = $ARGV[0];
if(!defined($file)) {exit}
$outfile = $file;
$outfile =~ s/ - EMBOSS[.]htm/.wiki/g;
open (OUT, ">/cygdrive/h/wikifix/$outfile") || die "Cannot open '$outfile'";
%author = ("ableasby" => "Bleasby",
"price" => "Rice",
"ilongden" => "Longden",
"mschuster" => "Schuster",
);
%types = ("Ione" => "Short",
# headers on one line "Ihtml" => "",
"Itable" => "Options",
"Usage" => "Example",
"Input" => "Input",
"Output" => "Output",
"History" => "History",
"Comment" => "Comment",
"Isee" => "Seealso"
);
%names = ("Alignformats" => "AlignFormats",
"Assemblyformats" => "AssemblyFormats",
"Codonformats" => "CodonFormats",
"Featformats" => "FeatFormats",
"Ontologyformats" => "OntologyFormats",
"Reportformats" => "ReportFormats",
"Resourceformats" => "ResourceFormats",
"Seqformats" => "SeqFormats",
"Seqfeatformats" => "SeqfeatFormats",
"Taxonformats" => "TaxonFormats",
"Textformats" => "TextFormats",
"Urlformats" => "UrlFormats",
"Variationformats" => "VariationFormats",
"Assemblyinformats" => "AssemblyInFormats",
"Codoninformats" => "CodonInFormats",
"Featinformats" => "FeatInFormats",
"Ontologyinformats" => "OntologyInFormats",
"Resourceinformats" => "ResourceInFormats",
"Seqinformats" => "SeqInFormats",
"Seqfeatinformats" => "SeqfeatInFormats",
"Taxoninformats" => "TaxonInFormats",
"Textinformats" => "TextInFormats",
"Urlinformats" => "UrlInFormats",
"Variationformats" => "VariationFormats",
"Gcfiles" => "GeneticCodeFiles",
"Localfiles" => "LocalFiles",
"Graphicsdevices" => "GraphicsDevices",
"Drcat" => "Drcat",
"Edam" => "Edam",
"Go" => "Go",
"Taxon" => "Taxon",
"Jaspfiles" => "JasparFiles",
"Refiles" => "RebaseFiles",
"Jison-programs" => "JonIsonPrograms",
);
use English;
$text = "";
while (<>) {
s/^[ \t]+//;
$text .= $_;
}
$text =~ s/^.*(<body class=\"mediawiki[^\"]+page-(\S+))/$1/osm; # remove all to start of mediawiki
print STDERR "Page name $2\n";
$text =~ s/^.*<h1 id=\"firstHeading\" class=\"firstHeading\">([^<]+)<\/h1>\n//osm; # remove all to start of mediawiki
print STDERR "Page true name $1\n";
$text =~ s/^.*?\n([^\n]+<span class=\"mw-headline\">)/$1/osm; # remove all to first heading
$text =~ s/<span class=noprint><span style=\"color:#[^\"]+\">//gosm;
$text =~ s/<\/span><\/span>/\n/gosm;
$text =~ s/<\!--\s*NewPP limit report[^>]*>//gosm; # remove biblio comments
$text =~ s/<\!--\s*Saved in parser cache.*//gosm; # remove all from start of google footer
$text =~ s/\s*<span class=\"mw-headline\">([^<]+)<\/span>/$1/gosm; # clean up headings
#header tages removed
$text =~ s/(<\/?[Hh][Tt][Mm][Ll]>)//gosm;
$text =~ s/(<\/?[Bb][Oo][Dd][Yy][^>]*?>)//gosm;
$text =~ s/(<[Aa]\s+name\s*=\s*\"([^\"]+)[^>]+>)[^<]*<\/[Aa]>//gosm;
# phylip doc links
$text =~ s/<[Aa]\s+href\s*=\s*\"([^\/\".]+\.html)[^>]+>([^<]+)<\/[Aa]>/[http:\/\/evolution.genetics.washington.edu\/phylip\/doc\/$1 $2]/gosm;
# other links
$text =~ s/<[Aa]\s+href\s*=\s*\"\/wiki\/([^\"]+)[^>]+>\s*([^<]+)<\/[Aa]>/[[$1| $2]]/gosm;
$text =~ s/<[Aa]\s+href\s*=\s*\"([Hh]?[FfTt][Tt][Pp]:[^\"]+)[^>]+>([^<]+)\s*<\/[Aa]>/[$1 $2]/gosm;
$text =~ s/<[Aa]\s+href\s*=\s*\"([Mm]?[Aa][Ii][Ll][Tt][Oo]:[^\"]+)[^>]+>([^<]+)\s*<\/[Aa]>/[$1 $2]/gosm;
$text =~ s/<[Aa]\s+href\s*=\s*\"([^\"]+)[^>]+>([^<]+)\s*<\/[Aa]>/[[$1| $2]]/gosm;
# headers on one line
$text =~ s/(<[Hh]\d>)\s*\n\s*/$1/gosm;
$text =~ s/\n(<\/[Hh]\d>)/$1/gosm;
# remove CSS divisions
$text =~ s/<\/[Dd][Ii][Vv]>//gosm;
# remove rulers
$text =~ s/<[Hh][Rr]>//gosm;
# header levels to wiki syntax
$text =~ s/<[Hh]1>(.*?)<\/[Hh]1>/==$1==/gosm;
$text =~ s/<[Hh]2>(.*?)<\/[Hh]2>/==$1==/gosm;
$text =~ s/<[Hh]3>(.*?)<\/[Hh]3>/===$1===/gosm;
$text =~ s/<[Hh]4>(.*?)<\/[Hh]4>/====$1====/gosm;
# paragraphs to extra newlines at start
$text =~ s/<[Pp]>/\n/gosm;
# remove table row end markings
$text =~ s/^(<\/[Tt][RrDdHh]>)+\n//gosm;
$text =~ s/<\/[Tt][RrDdHh]>//gosm;
$text =~ s/^(<\/[Cc][Aa][Pp][Tt][Ii][Oo][Nn]>)+\n//gosm;
$text =~ s/<\/[Cc][Aa][Pp][Tt][Ii][Oo][Nn]>//gosm;
# remove end-of-paragraph
$text =~ s/<\/[Pp]>//gosm;
# breaks
$text =~ s/(<\/?[Bb][Rr][^>]*>)/\n/gosm;
# bold text
$text =~ s/(<\/?[Bb][^>]*>)/'''/gosm;
# emphasis = bold
$text =~ s/(<\/?[Ee][Mm]>)/'''/gosm;
# italic
$text =~ s/(<\/?[Ii]>)/''/gosm;
# remove empty newlines after list tags
$text =~ s/(<\/?[Ll][Ii]>)\n/$1/gosm;
$text =~ s/(<\/[Ll][Ii]>)//gosm;
$text =~ s/(<\/?[Dd][DdTt]>)\n/$1/gosm;
$text =~ s/(<\/[Dd][DdTt]>)//gosm;
$text =~ s/([^\n])(<[Tt][HhDd][^>]*>)/$1\n$2/gosm;
# Now process the text line-by-line
$i=0;
$pre = 0;
$head=0;
$blank=0;
$table = 0;
$list = "";
while ($text =~ /.*?\n/gos) {
$t = $MATCH;
if($t =~ s/<[Hh][Ee][Aa][Dd]>//gosm) {$head=1}
if($t =~ s/<\/[Hh][Ee][Aa][Dd]>//gosm) {$head=0;next}
if($t =~ s/<!--#include file="header1.inc" -->//gosm) {$head=1}
if($t =~ s/<!--#include file="header2.inc" -->//gosm) {$head=0;next}
if($head) {next}
if($t =~ s/<\/[Tt][Aa][Bb][Ll][Ee][^>]*>//gosm) {
$table = 0;
print OUT "|}\n";
}
if($t =~ s/<[Tt][Aa][Bb][Ll][Ee]([^>]*)>//gosm) {
$table = 1;
$rest = $1;
$resttext = "";
if($rest =~ /sortable/) {$resttext = " sortable"}
print OUT "\n{| class=\"wikitable$resttext\" style=\"background:#ccccff\" border=\"2\"\n";
}
if($t =~ s/<\/[OoUuDd][Ll]>//gosm) {$list = ""}
if($t =~ s/<[Uu][Ll]>//gosm) {$list = "u";$nlist=0}
if($t =~ s/<[Oo][Ll]>//gosm) {$list = "o";$nlist=0}
if($t =~ s/<[Dd][Ll]>//gosm) {$list = "d";$nlist=0}
if($t =~ s/<[Pp][Rr][Ee]>//gosm) {$pre = 1}
if($t =~ s/<\/[Pp][Rr][Ee]>//gosm) {$pre = 0}
if($t =~ /<[!]--[\#]include file=\"([^\"]+)\" -->/gosm){
$ifile = $1;
if($ifile =~ /inc\/([^.]+)[.]address/){
$aname = $1;
if(defined($author{$aname})){$aname = $author{$aname}}
else {$aname = ucfirst($aname)}
$t = "\{\{:Appinc:Address$aname\}\}\n";
}
elsif($ifile =~ /inc\/target([^.]*)[.]itxt/){
$tgtname = ucfirst($1);
$t = "\{\{:Appinc:Target$tgtname\}\}\n";
}
elsif($ifile =~ /inc\/([^.]+)[.]ihelp/){
$t = "";
}
elsif($ifile =~ /inc\/([^.]+)[.](.*)/){
$name = ucfirst($1);
$type=ucfirst($2);
if(defined($names{$name})){$name = $names{$name}}
if(defined($types{$type})){$type = $types{$type}}
if($type eq "Seealso") {
print OUT "==See also==\n";
}
$t = "\{\{:Appinc:$type$name\}\}\n";
}
}
if(!$pre & $t =~ /^\n$/) {$blank++}
else{$blank=0}
$i++;
if($blank > 1){next}
if($blank == 1 && $list ne ""){next}
# print OUT "$i:";
if($list ne "") {$t =~ s/\n/ /}
if($pre) {print OUT " "}
if($t =~ s/<[Tt][Rr]>//gosm) {
if($table) {
print OUT "|-";
$table = 2;
}
}
if($t =~ s/<[Cc][Aa][Pp][Tt][Ii][Oo][Nn]>//gosm) {
if($table) {
print OUT "|+";
$table = 2;
}
}
if($t =~ s/<[Tt][Hh]([^>]*)>//gosm) {
if($table) {
$rest = $1;
$resttext = "";
if($rest =~ /colspan=\"(\d+)\"/) {
$resttext .= " colspan=\"$1\"";
}
if($rest =~ /class=\"unsortable"/) {
$resttext .= " class=\"unsortable\"";
}
if($rest =~ /background:(#[0-9a-fA-F]+)/) {
$resttext .= " style=\"background:$1\"";
}
if($resttext ne "") {$resttext .= "|"}
print OUT "!$resttext ";
$table = 4;
}
}
if($t =~ s/<[Tt][Dd]>//gosm) {
if($table) {
print OUT "| ";
$table = 3;
}
}
if($t =~ s/<[Ll][Ii]>//gosm) {
if($nlist++){print OUT "\n"}
if($list eq "u") {print OUT "* "}
elsif($list eq "o") {print OUT "# "}
}
if($t =~ s/<[Dd][Tt]>([^<]*)//gosm) {
if($nlist++){print OUT "\n"}
if($list eq "d") {print OUT "; $1"}
}
if($t =~ s/<[Dd][Dd]>//gosm) {
if($nlist++){print OUT "\n"}
if($list eq "d") {print OUT ": "}
}
if($nlist && $list eq "") {print OUT "\n";$nlist=0;}
print OUT "$t";
}
|
