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/* @include ensgvbaseadaptor **************************************************
**
** Ensembl Genetic Variation Base Adaptor functions
**
** @author Copyright (C) 1999 Ensembl Developers
** @author Copyright (C) 2006 Michael K. Schuster
** @version $Revision: 1.12 $
** @modified 2009 by Alan Bleasby for incorporation into EMBOSS core
** @modified $Date: 2013/02/17 13:16:34 $ by $Author: mks $
** @@
**
** This library is free software; you can redistribute it and/or
** modify it under the terms of the GNU Lesser General Public
** License as published by the Free Software Foundation; either
** version 2.1 of the License, or (at your option) any later version.
**
** This library is distributed in the hope that it will be useful,
** but WITHOUT ANY WARRANTY; without even the implied warranty of
** MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
** Lesser General Public License for more details.
**
** You should have received a copy of the GNU Lesser General Public
** License along with this library; if not, write to the Free Software
** Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston,
** MA 02110-1301, USA.
**
******************************************************************************/
#ifndef ENSGVBASEADAPTOR_H
#define ENSGVBASEADAPTOR_H
/* ========================================================================= */
/* ============================= include files ============================= */
/* ========================================================================= */
#include "ensgvdata.h"
AJ_BEGIN_DECLS
/* ========================================================================= */
/* =============================== constants =============================== */
/* ========================================================================= */
/* ========================================================================= */
/* ============================== public data ============================== */
/* ========================================================================= */
/* ========================================================================= */
/* =========================== public functions ============================ */
/* ========================================================================= */
/*
** Prototype definitions
*/
/* Ensembl Genetic Variation Base Adaptor */
EnsPGvbaseadaptor ensGvbaseadaptorNew(
EnsPGvdatabaseadaptor gvdba,
const char *const *Ptablenames,
const char *const *Pcolumnnames,
const EnsPBaseadaptorLeftjoin leftjoins,
const char *defaultcondition,
const char *finalcondition,
AjBool (*Fstatement) (EnsPBaseadaptor ba,
const AjPStr statement,
EnsPAssemblymapper am,
EnsPSlice slice,
AjPList objects));
void ensGvbaseadaptorDel(EnsPGvbaseadaptor *Pgvba);
EnsPBaseadaptor ensGvbaseadaptorGetBaseadaptor(
EnsPGvbaseadaptor gvba);
EnsPDatabaseadaptor ensGvbaseadaptorGetDatabaseadaptor(
EnsPGvbaseadaptor gvba);
AjBool ensGvbaseadaptorGetFailedvariations(
EnsPGvbaseadaptor gvba);
EnsPGvdatabaseadaptor ensGvbaseadaptorGetGvdatabaseadaptor(
EnsPGvbaseadaptor gvba);
ajuint ensGvbaseadaptorLoadPloidy(
EnsPGvbaseadaptor gvba);
/*
** End of prototype definitions
*/
AJ_END_DECLS
#endif /* !ENSGVBASEADAPTOR_H */
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