1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
|
/* @include ensprojectionsegment **********************************************
**
** Ensembl Projection Segment functions
**
** @author Copyright (C) 1999 Ensembl Developers
** @author Copyright (C) 2006 Michael K. Schuster
** @version $Revision: 1.9 $
** @modified 2009 by Alan Bleasby for incorporation into EMBOSS core
** @modified $Date: 2012/02/04 10:30:24 $ by $Author: mks $
** @@
**
** This library is free software; you can redistribute it and/or
** modify it under the terms of the GNU Lesser General Public
** License as published by the Free Software Foundation; either
** version 2.1 of the License, or (at your option) any later version.
**
** This library is distributed in the hope that it will be useful,
** but WITHOUT ANY WARRANTY; without even the implied warranty of
** MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
** Lesser General Public License for more details.
**
** You should have received a copy of the GNU Lesser General Public
** License along with this library; if not, write to the Free Software
** Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston,
** MA 02110-1301, USA.
**
******************************************************************************/
#ifndef ENSPROJECTIONSEGMENT_H
#define ENSPROJECTIONSEGMENT_H
/* ========================================================================= */
/* ============================= include files ============================= */
/* ========================================================================= */
#include "ensslice.h"
AJ_BEGIN_DECLS
/* ========================================================================= */
/* =============================== constants =============================== */
/* ========================================================================= */
/* ========================================================================= */
/* ============================== public data ============================== */
/* ========================================================================= */
/* @data EnsPProjectionsegment ************************************************
**
** Ensembl Projection Segment
**
** @alias EnsSProjectionsegment
** @alias EnsOProjectionsegment
**
** @attr SourceStart [ajuint] Source start coordinate
** @attr SourceEnd [ajuint] Source end coordinate
** @attr TargetSlice [EnsPSlice] Target Ensembl Slice
** @attr Use [ajuint] Use counter
** @attr Padding [ajuint] Padding to alignment boundary
** @@
******************************************************************************/
typedef struct EnsSProjectionsegment
{
ajuint SourceStart;
ajuint SourceEnd;
EnsPSlice TargetSlice;
ajuint Use;
ajuint Padding;
} EnsOProjectionsegment;
#define EnsPProjectionsegment EnsOProjectionsegment*
/* ========================================================================= */
/* =========================== public functions ============================ */
/* ========================================================================= */
/*
** Prototype definitions
*/
EnsPProjectionsegment ensProjectionsegmentNewCpy(
const EnsPProjectionsegment ps);
EnsPProjectionsegment ensProjectionsegmentNewIni(ajuint srcstart,
ajuint srcend,
EnsPSlice trgslice);
EnsPProjectionsegment ensProjectionsegmentNewRef(EnsPProjectionsegment ps);
void ensProjectionsegmentDel(EnsPProjectionsegment *Pps);
ajuint ensProjectionsegmentGetSourceStart(const EnsPProjectionsegment ps);
ajuint ensProjectionsegmentGetSourceEnd(const EnsPProjectionsegment ps);
EnsPSlice ensProjectionsegmentGetTargetSlice(const EnsPProjectionsegment ps);
AjBool ensProjectionsegmentTrace(const EnsPProjectionsegment ps, ajuint level);
size_t ensProjectionsegmentCalculateMemsize(const EnsPProjectionsegment ps);
/*
** End of prototype definitions
*/
AJ_END_DECLS
#endif /* !ENSPROJECTIONSEGMENT_H */
|
