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<HTML>
<HEAD>
<TITLE>
EMBOSS
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<table align=center border=0 cellspacing=0 cellpadding=0>
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<A HREF="/" ONMOUSEOVER="self.status='Go to the EMBOSS home page';return true"><img border=0 src="emboss_icon.jpg" alt="" width=150 height=48></a>
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<td align=left valign=middle>
<b><font size="+6">
PROTEIN FUNCTIONAL SITES
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<br>
<p>
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Protein functional sites
<p>
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<tr><th>Program name</th><th>Description</th></tr>
<tr>
<td><a href="sigcleave.html">sigcleave</a></td>
<td>
Report on signal cleavage sites in a protein sequence
</td>
</tr>
<tr>
<td><a href="tmap.html">tmap</a></td>
<td>
Predict and plot transmembrane segments in protein sequences
</td>
</tr>
<tr>
<td><a href="../embassy/cbstools/echlorop.html">echlorop</a></td>
<td>
Report presence of chloroplast transit peptides
</td>
</tr>
<tr>
<td><a href="../embassy/cbstools/elipop.html">elipop</a></td>
<td>
Predict lipoproteins
</td>
</tr>
<tr>
<td><a href="../embassy/cbstools/esignalp.html">esignalp</a></td>
<td>
Report protein signal cleavage sites
</td>
</tr>
<tr>
<td><a href="../embassy/cbstools/etmhmm.html">etmhmm</a></td>
<td>
Reports transmembrane helices
</td>
</tr>
<tr>
<td><a href="../embassy/signature/siggenlig.html">siggenlig</a></td>
<td>
Generate ligand-binding signatures from a CON file
</td>
</tr>
<tr>
<td><a href="../embassy/signature/sigscan.html">sigscan</a></td>
<td>
Generate hits (DHF file) from a signature search
</td>
</tr>
<tr>
<td><a href="../embassy/topo/topo.html">topo</a></td>
<td>
Draw an image of a transmembrane protein
</td>
</tr>
</table>
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