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<HTML>
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<TITLE>
EMBOSS
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<A HREF="/" ONMOUSEOVER="self.status='Go to the EMBOSS home page';return true"><img border=0 src="emboss_icon.jpg" alt="" width=150 height=48></a>
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<b><font size="+6">
PROTEIN PROFILES
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Protein profile generation and searching
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<tr><th>Program name</th><th>Description</th></tr>
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<td><a href="profit.html">profit</a></td>
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Scan one or more sequences with a simple frequency matrix
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<td><a href="prophecy.html">prophecy</a></td>
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Create frequency matrix or profile from a multiple alignment
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<td><a href="prophet.html">prophet</a></td>
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Scan one or more sequences with a Gribskov or Henikoff profile
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<td><a href="../embassy/domsearch/seqsearch.html">seqsearch</a></td>
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Generate PSI-BLAST hits (DHF file) from a DAF file
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<td><a href="../embassy/signature/siggen.html">siggen</a></td>
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Generate a sparse protein signature from an alignment
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<td><a href="../embassy/signature/siggenlig.html">siggenlig</a></td>
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Generate ligand-binding signatures from a CON file
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<td><a href="../embassy/signature/sigscan.html">sigscan</a></td>
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Generate hits (DHF file) from a signature search
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<td><a href="../embassy/signature/sigscanlig.html">sigscanlig</a></td>
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Search ligand-signature library and writes hits (LHF file)
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