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# Known Types
# Knowntype_string | Type | EDAM | Comment
aaindex_data | file | "EDAM_data:1501 Amino acid index" | AAINDEX entry
aaindex_database | file | | AAINDEX database
abi_trace | file | "EDAM_data:0924 Sequence trace" | ABI sequencing trace
acd_file | file | | EMBOSS ACD file
ajint_ajlong_data | file | | Standard format info on ajint and ajlong
alistat_input | file | "EDAM_data:1384 Sequence alignment (protein)" | HMMER alistat program input
alistat_output | file | "EDAM_data:2083 Alignment report" | HMMER alistat program output
amino_acid_classification | file | "EDAM_data:1502 Amino acid index (chemical classes)" | Amino acid chemical classes data
amino_acid_frequencies | file | "EDAM_data:1535 Peptide fragment molecular weight frequencies" | Amino acid frequencies data
amino_acid_hydropathy | file | "EDAM_data:1506 Amino acid index (hydropathy)" | Amino acid hydropathy values data
amino_acid_properties | file | "EDAM_data:1502 Amino acid index (chemical classes)" | Amino acids properties and molecular weight data
ancestral_states | properties | "EDAM_data:1427 Phylogenetic discrete data" | Phylip ancestral states file
ascii_text | file | "EDAM_data:0969 Text" | ASCII text
background_markov_model_meme | file | "EDAM_data:1364 Hidden Markov model" | MEME background Markov model
base_pair_stacking_energies | file | "EDAM_data:1588 DNA base pair stacking energies data" | DNA base pair stacking energies data
base_pair_twist_angles | file | "EDAM_data:1589 DNA base pair twist angle data" | DNA base pair twist angle data
base_trimer_roll_angles | file | "EDAM_data:1590 DNA base trimer roll angles data" | DNA base trimer roll angles data
blast_nucleotide_dbname | string | "EDAM_data:1056 Database name" | Blast nucleotide database name
blast_protein_dbname | string | "EDAM_data:1056 Database name" | Blast protein database name
cds_sequence | sequence | "EDAM_data:0849 Sequence record" | Coding
cirdna_mapping_commands | file | "EDAM_data:2152 Rendering parameter" | Commands to the cirdna drawing program
clique_input | file | "EDAM_data:1427 Phylogenetic discrete data" | Phylip clique program input
clique_output | file | "EDAM_data:1428 Phylogenetic report (cliques)" | Phylip clique program output
codon_list | string | "EDAM_data:0848 Raw sequence" | Codon triplet(s)
codon_usage | codon | "EDAM_data:1597 Codon usage table" | Codon usage
comparison_matrix | file | "EDAM_data:0874 Comparison matrix" | Comparison matrix file
comparison_matrix_name | string | "EDAM_data:0874 Comparison matrix" | Comparison matrix name
compseq_output | file | "EDAM_data:1261 Sequence property (composition)" | Program compseq output
contact | file | "EDAM_data:1547 Protein contact map" | Structure contacts
continuous_character | frequencies | "EDAM_data:1426 Phylogenetic continuous quantitative data" | Continuous character frequency
continuous_character_frequency | file | "EDAM_data:1426 Phylogenetic continuous quantitative data" | Phylip continuous character frequency
contml_input | file | "EDAM_data:1426 Phylogenetic continuous quantitative data" | Phylip contml program input
contml_output | file | "EDAM_data:0872 Phylogenetic tree" | Phylip contml program output
contrast_output | file | "EDAM_data:1444 Phylogenetic report (character contrasts)" | Phylip contrast program output
database_metadata | file | "EDAM_data:0957 Database metadata" | Database metadata
database_cross-reference_list | file | "EDAM_data:2093 Data reference" | List of database cross-references
database_info | file | "EDAM_data:0957 Database metadata" | Database information
database_release | string | "EDAM_data:1670 Database version information" | Database name and release number
date | string | "EDAM_data:2156 Date" | Date in dd/mm/yy format
dendrogram | file | "EDAM_data:0872 Phylogenetic tree" | Dendrogram (tree file) from clustalw
dictionary_of_heterogen_groups | file | "EDAM_data:2240 Heterogen annotation" | Dictionary of heterogen groups
dirichlet_prior_hmmer | file | "EDAM_data:1347 Dirichlet distribution" | HMMER dirichlet prior
dirichlet_prior_meme | file | "EDAM_data:1347 Dirichlet distribution" | MEME dirichlet prior
discrete_characters_input | file | "EDAM_data:1427 Phylogenetic discrete data" | Phylip discrete characters
discrete_characters | discretestates | "EDAM_data:1427 Phylogenetic discrete data" | Phylip character discrete states
discrete_states | discretestates | "EDAM_data:1427 Phylogenetic discrete data" | Phylip discrete states
discriminator | file | "EDAM_data:1354 Sequence profile" | Discriminator
distance_matrix | distances | "EDAM_data:0870 Sequence distance matrix" | Phylip distance matrix
dna_fasta | file | "EDAM_data:2887 Sequence record (nucleic acid)" | Nucleotide sequence in FASTA format
dna_fasta_set | file | "EDAM_data:2887 Sequence record (nucleic acid)" | Nucleotide sequences in FASTA format
dnacomp_output | file | "EDAM_data:0872 Phylogenetic tree" | Phylip dnacomp program output
dnadist_output | file | "EDAM_data:0870 Sequence distance matrix" | Phylip dnadist program output
dnainvar_output | file | "EDAM_data:1429 Phylogenetic report (invariants)" | Phylip dnainvar program output
dnaml_output | file | "EDAM_data:0872 Phylogenetic tree" | Phylip dnaml program output
dnamlk_output | file | "EDAM_data:0872 Phylogenetic tree" | Phylip dnamlk program output
dnapars_output | file | "EDAM_data:0872 Phylogenetic tree" | Phylip dnapars program output
dnapenny_output | file | "EDAM_data:0872 Phylogenetic tree" | Phylip dnapenny program output
dollop_input | file | "EDAM_data:1427 Phylogenetic discrete data" | Phylip dollop program input
dollop_output | file | "EDAM_data:0872 Phylogenetic tree" | Phylip dollop program output
dolpenny_input | file | "EDAM_data:1427 Phylogenetic discrete data" | Phylip dolpenny program input
dolpenny_output | file | "EDAM_data:0872 Phylogenetic tree" | Phylip dolpenny program output
domain_alignment | file | "EDAM_data:1384 Sequence alignment (protein)" | Domain alignment
domain_ambiguities | file | "EDAM_data:0849 Sequence record" | Domain ambiguities
domain_classification | file | "EDAM_data:0900 Protein domain classification" | Domain classification
domain_clean_coordinates | file | "EDAM_data:1468 Protein domain" | Clean domain coordinates
domain_families | file | "EDAM_data:0849 Sequence record" | Domain families
domain_hits | file | "EDAM_data:0849 Sequence record" | Domain hits
domain_hits_filter | file | "EDAM_data:0849 Sequence record" | Domain hits filter
domain_pdb | file | "EDAM_data:1468 Protein domain" | Domain pdb
domainatrix_calculations_log | file | "EDAM_data:1678 Tool log" | Domainatrix calculations log
domainatrix_ligand_hits | file | "EDAM_data:0857 Database hits (sequence)" | Domainatrix LHF ligand hits
domainatrix_log | file | "EDAM_data:1678 Tool log" | Domainatrix log
domainatrix_signature | file | "EDAM_data:1354 Sequence profile" | Domainatrix signature
domainatrix_substitution_matrix | file | "EDAM_data:1499 3D-1D scoring matrix" | Domainatrix substitution matrix
drawgram_output | file | "EDAM_data:0872 Phylogenetic tree" | Phylip drawgram output
drawtree_output | file | "EDAM_data:0872 Phylogenetic tree" | Phylip drawtree output
edam_relations | file | | EDAM relations
email_address | string | "EDAM_data:1691 Email address" | Email address
embassy_package | string | "EDAM_data:1195 Tool name (EMBASSY package)" | EMBASSY package name
emboss_database_directory | directory | "EDAM_data:1049 Directory name" | Database directory
emboss_database_field | string | "EDAM_data:2527 Parameter or primitive" | Database field
emboss_database_index | file | "EDAM_data:1049 Directory name" | Index
emboss_database_name | string | "EDAM_data:1056 Database name" | Database name
emboss_database_release | string | "EDAM_data:1670 Database version information" | Database release number
emboss_database_wildcard_filename | string | "EDAM_data:1050 File name" | Database wildcard filename
emboss_datafile | file | "EDAM_data:0957 Database metadata" | EMBOSS datafile
emboss_keyword | string | "EDAM_data:0968 Keyword" | EMBOSS program keyword
emboss_knowntypes | file | | EMBOSS known types
emboss_program | string | "EDAM_data:1194 Tool name (EMBOSS)" | EMBOSS program name
emboss_resource_name | string | "EDAM_data:2527 Parameter or primitive" | Resource name
emboss_server_name | string | "EDAM_data:2527 Parameter or primitive" | Server name
emboss_server_cache_file | file | "EDAM_data:2527 Parameter or primitive" | Server cache
embossversion_output | file | "EDAM_data:1671 Tool version information" | EMBOSS version
entry_full_text | file | "EDAM_data:0957 Database metadata" | Full text
enzyme_data | file | "EDAM_data: Enzymatic reaction data" | Enzyme kinetics data (application-specific)
enzyme_list | string | "EDAM_data: Restriction enzyme name" | Restriction enzyme name list
enzyme_name | string | "EDAM_data: Restriction enzyme name" | Restriction enzyme name
est_sequence | sequence | "EDAM_data: Nucleotide sequence" | Spliced EST
exp_file | file | "EDAM_data: EXP assembly project file" | EXP assembly project file
exp_file_of_filenames | file | "EDAM_data: List of file names" | EXP assembly project file of filenames
external_program | string | "EDAM_data: Generic application name" | External program name
factor_input | file | "EDAM_data: PHYLIP discrete states file" | Phylip factor program input
factor_output | file | "EDAM_data: PHYLIP discrete states file" | Phylip factor program output
feature_key | string | "EDAM_data: Sequence feature type" | Feature table keys with wildcards, separated by pipe character
feature_key_list | string | "EDAM_data: List of sequence feature types" | List of feature table key
feature_source_list | string | "EDAM_data: List of sequence feature sources" | List of feature sources with wildcards, separated by pipe character
feature_tag_list | string | "EDAM_data: List of sequence feature tags" | List of feature tags with wildcards, separated by pipe character
feature_tagvalue_list | string | "EDAM_data: Generic string" | List of feature tag values with wildcards, separated by pipe character
file_extension | string | "EDAM_data: File extension" | Filename extension
filename | string | "EDAM_data: File name" | Input base filename
file_basename | string | "EDAM_data: File name" | Input filename base name
filename_prefix | string | "EDAM_data: File name" | Input filename prefix
filename_wildcard | string | "EDAM_data: File name" | Input filename wildcard
fitch_input | file | "EDAM_data: PHYLIP phylogenetic distance matrix file" | Phylip fitch program input
fitch_output | file | "EDAM_data: Phylip phylogenetic tree raw data" | Phylip fitch program output
float_gap_extension | float | "EDAM_data: Floating point gap extension penalty" | Affine gap extension penalty
float_gap_penalty | float | "EDAM_data: Floating point gap opening penalty" | Affine gap penalty
freqboot_input | file | | Phylip freqboot program input
freqboot_output | file | | Phylip freqboot program output
gendist_input | frequencies | "EDAM_data: PHYLIP phylogenetic character frequencies file" | Phylip gendist program input
gendist_output | file | "EDAM_data: PHYLIP phylogenetic distance matrix file" | Phylip gendist program output
genetic_code | list | "EDAM_data: Genetic code" | Standard genetic code
genomic_sequence | sequence | "EDAM_data: Nucleotide sequence" | Unspliced genomic
gff | file | "EDAM_data: Sequence feature table file" | GFF format features
hits | file | "EDAM_data: EMBASSY domain hits report" | Hits
hmm | file | "EDAM_data: HMMER hidden Markov model" | HMMER hidden markov model
hmm_database | file | "EDAM_data: HMMER hidden Markov model database" | HMMER hmm database
hmm_database_name | string | "EDAM_data: Sequence profile database name" | HMMER hmm database name
hmm_entry_name | string | "EDAM_data: HMMER hidden Markov model identifier" | HMMER hmm database entry id
hmmalign_output | file | "EDAM_data: HMMER hidden Markov model" | HMMER hmmalign program output
hmmcalibrate_output | file | "EDAM_data: HMMER hidden Markov model" | HMMER hmmcalibrate program output
hmmemit_output | file | "EDAM_data: HMMER synthetic sequences record" | HMMER hmmemit program output
hmmer_alignment | file | "EDAM_data: HMMER sequence alignment file" | HMMER alignment
hmmer_count | file | "EDAM_data: HMMER emission and transition count report" | HMMER emission and transition count
hmmer_histogram | file | "EDAM_data: Histogram graph data" | HMMER histogram
hmmer_matrix | file | "EDAM_data: Amino acid comparison matrix" | HMMER matrix
hmmer_null_model | file | "EDAM_data: HMMER NULL hidden Markov model" | HMMER null model
hmmpfam_output | file | "EDAM_data: HMMER alignment report (sequences versus HMMs)" | HMMER hmmpfam program output
hmmsearch_output | file | "EDAM_data: HMMER alignment report (HMM versus sequences)" | HMMER hmmsearch program output
input_directory | directory | "EDAM_data: Directory name" | Input directory
integer_gap_extension | integer | "EDAM_data: Integer gap extension penalty" | Affine gap extension penalty
integer_gap_penalty | integer | "EDAM_data: Integer gap opening penalty" | Affine gap penalty
integer_long_data | file | | Standard format information on int and long data
inverted_output | file | "EDAM_data: Sanger inverted repeat sequence map report" | Sanger Centre program inverted output
jaspar_database | file | "EDAM_data: JASPAR database" | JASPAR database
jaspar_matrix_id | string | "EDAM_data: JASPAR profile identifier" | JASPAR matrix identifier
keyword | string | "EDAM_data: Keywords" | Keyword
keywords | file | "EDAM_data: Keywords" | Keywords file
kitsch_input | file | | Phylip kitsch program input
kitsch_output | file | "EDAM_data: Phylip phylogenetic tree raw data" | Phylip kitsch program output
ligand_list | file | "EDAM_data: List of HET group strings" | Domainatrix ligand code list
lindna_mapping_commands | file | | Commands to the lindna drawing program
log | file | "EDAM_data: Application log file" | General log
mast_output | file | "EDAM_data: MAST alignment report" | MAST program output
matrix | file | "EDAM_data: Position Weight Matrix (PWM)" | Weight matrix
megamerger_report | report | "EDAM_data: EMBOSS megamerger log file" | Report file from megamerger program
meme_alphabet | file | "EDAM_data: MEME motif alphabet" | MEME motif alphabet
meme_database | file | "EDAM_data: Sequence database" | MEME database
meme_background_frequencies | file | "EDAM_data: MEME background frequencies file" | MEME background frequencies file
meme_motif_order | string | "EDAM_data: MEME motifs directive file" | MEME directive for ordering and spacing of motifs
meme_output | file | "EDAM_data: MEME sequence motif record" | MEME program output
meme_text_output | file | | MEME program text output
mira_parameters | file | | MIRA program parameters
mira_strain_data | file | "EDAM_data: MIRA strain data file" | MIRA program strain data file
mix_input | file | | Phylip mix program input
mix_output | file | "EDAM_data: PHYLIP discrete states file" | Phylip mix program output
molecular_weights | file | "EDAM_data: Amino acid molecular weight data" | Molecular weights
mrna_sequence | sequence | "EDAM_data: RNA sequence" | Messenger RNA
multistate_factors | properties | "EDAM_data: PHYLIP discrete states file" | Phylip multistate factors
naccess_log | file | "EDAM_data: NACCESS log file" | Naccess program log
name | string | "EDAM_data: Generic string" | Single word without spaces
name_prefix | string | "EDAM_data: Generic string" | First part of a name
name_suffix | string | "EDAM_data: Generic string" | Last part of a name
ncbi_taxonomy | file | | NCBI taxonomy
needleall_error | file | "EDAM_data: EMBOSS needleall log file" | Program needleall errors
neighbor_input | file | | Phylip neighbor program input
neighbor_output | file | "EDAM_data: Phylip phylogenetic tree raw data" | Phylip neighbor program output
newcoils_datafile | file | | Program newcoils data
newick | tree | "EDAM_data: PHYLIP phylogenetic tree report" | Phylip tree
newick_tree | file | "EDAM_data: PHYLIP phylogenetic tree report" | Phylip tree
non_coding_sequence | sequence | "EDAM_data: Nucleotide sequence" | Non-coding
nucleotide_codes | string | "EDAM_data: Nucleotide code string" | DNA/RNA sequence characters
nucleotide_sequence | string | "EDAM_data: Nucleotide sequence" | DNA/RNA sequence
obo_file | file | "EDAM_data: Ontological data" | OBO file
ontology_name | file | "EDAM_data: Ontology name" | Ontology name
output_delimiter | string | "EDAM_data: Generic string" | Delimiter between fields in single line output
output_general | file | "EDAM_data: Generic file" | General output
output_filename | string | "EDAM_data: File name" | Output filename
output_format | string | "EDAM_data: Generic enumerated string" | Output file format
output_identifier | string | "EDAM_data: Generic string" | Identifier to be used in output
overlap | file | | Sequence overlap lengths
pars_output | file | "EDAM_data: Phylip phylogenetic tree raw data" | Phylip pars program output
pdb | file | "EDAM_data: PDB record" | Pdb entry
pdb_prefix | string | "EDAM_data: PDB identifier" | Pdb entry prefix
penny_input | file | | Phylip penny program input
penny_output | file | "EDAM_data: Phylip phylogenetic tree raw data" | Phylip penny program output
pepstats_output | file | "EDAM_data: Protein physicochemical profile" | Pepstats program output
peptide_molweights | file | "EDAM_data: Peptide molecular weight data" | Peptide molecular weight values
phd_file_of_filenames | file | "EDAM_data: List of file names" | PHD assembly project file of filenames
phd_sequences | file | "EDAM_data: PHD assembly project file" | PHD assembly project sequences file
phylip_ancestor | file | "EDAM_data: PHYLIP discrete states file" | Phylip ancestor data
phylip_category_values | string | | Space-separated phylip category values
phylip_factor | file | "EDAM_data: PHYLIP discrete states file" | Phylip factor data
phylip_font | string | "EDAM_data: File name" | Phylip font
phylip_mix | file | "EDAM_data: PHYLIP discrete states file" | Phylip mix data
phylip_probability_values | string | | Space-separated phylip probability values
plot_colour | string | "EDAM_data: Generic enumerated string" | Plot colour name
plot_shading | string | "EDAM_data: Generic enumerated string" | Plot shading BPLW in any order
postscript | file | | Postscript
primer3_mishybridizing | file | "EDAM_data: Primer3 internal oligo mishybridizing library" | Primer3 internal oligo mishybridizing library
primer3_mispriming | file | "EDAM_data: Primer3 mispriming library file" | Primer3 mispriming library
primer3_output | file | "EDAM_data: Primer3 primer report" | Whitehead primer3_core program output
primer_pairs | file | "EDAM_data: Primer pairs sequence record" | Primer pairs
prints_database | file | "EDAM_data: PRINTS database" | PRINTS database
profile | file | "EDAM_data: Sequence profile" | Profile data
profile_or_matrix | file | "EDAM_data: Sequence profile" | Profile or weight matrix
program_name | string | "EDAM_data: Generic application name" | Program name with command line options to follow
proml_output | file | "EDAM_data: Phylip phylogenetic tree raw data" | Phylip proml program output
promlk_output | file | "EDAM_data: Phylip phylogenetic tree raw data" | Phylip promlk program output
prosite_database | file | "EDAM_data: Prosite database" | PROSITE database
prosite_nucleotide_pattern | string | "EDAM_data: Prosite nucleotide pattern" | PROSITE nucleotide pattern
prosite_pattern | string | "EDAM_data: Prosite protein pattern" | PROSITE protein pattern
protdist_input | file | | Phylip protdist program input
protdist_output | file | "EDAM_data: PHYLIP phylogenetic distance matrix file" | Phylip protdist program output
protein_clean_coordinates | file | "EDAM_data: Protein tertiary structure" | Clean protein structure coordinates
protein_codes | string | "EDAM_data: Amino acid code string" | Protein sequence characters
protein_fasta | file | "EDAM_data: Protein FASTA record" | Protein sequence in FASTA format
protein_fasta_set | file | "EDAM_data: Protein FASTA record" | Protein sequences in FASTA format
protein_sequence | file | "EDAM_data: Sequence record (protein)" | Protein sequence in FASTA format
protpars_input | file | | Phylip protpars program input
protpars_output | file | "EDAM_data: Phylip phylogenetic tree raw data" | Phylip protpars program output
quicktandem_output | file | "EDAM_data: quicktandem repeat sequence map report" | Sanger Centre program quicktandem output
raw_cath_domlist | file | "EDAM_data: Raw CATH classification (description) file" | Raw cath domlist
raw_cath_list | file | "EDAM_data: Raw CATH classification (list) file" | Raw cath list
raw_cath_names | file | "EDAM_data: Raw CATH classification (names) file" | Raw cath names
raw_dictionary_of_heterogen_groups | file | "EDAM_data: HET group dictionary" | Raw dictionary of heterogen groups
raw_scop_classification | file | "EDAM_data: Raw SCOP classification file" | Raw scop classification
raw_scop_description | file | "EDAM_data: Raw SCOP classification (description) file" | Raw scop description
rebase_proto | file | "EDAM_data: REBASE proto record" | REBASE database proto
rebase_withrefm | file | "EDAM_data: REBASE withrefm record" | REBASE database withrefm
regular_expression | string | "EDAM_data: Regular expression" | Regular expression
restboot_input | file | | Phylip restboot program input
restboot_output | file | "EDAM_data: Phylip bootstrapped sequence data" | Phylip restboot program output
restdist_output | file | "EDAM_data: PHYLIP phylogenetic distance matrix file" | Phylip restdist program output
restml_input | file | | Phylip restml program input
restml_output | file | "EDAM_data: Phylip phylogenetic tree raw data" | Phylip restml program output
restriction_enzyme_data | file | "EDAM_data: Restriction enzyme pattern data" | Restriction enzyme data
restriction_enzyme_methylation_data | file | "EDAM_data: Restriction enzyme reference data" | Restriction enzyme methylation data
rna_concentration | file | "EDAM_data: Vienna RNA concentration data" | Vienna RNA concentration data
rna_constraint | file | "EDAM_data:0866 Sequence alignment metadata" | Vienna RNA structure constraints
rna_parameter | file | "EDAM_data:2527 Parameter or primitive" | Vienna RNA parameters
rna_structures | file | "EDAM_data: Vienna RNA secondary structure record" | Vienna RNA structures
rnaeval_output | file | "EDAM_data: Vienna RNA calculated energy" | Vienna RNAeval output
rnafold_output | file | "EDAM_data: Vienna RNA secondary structure record" | Vienna RNAfold output
rnalfold_output | file | "EDAM_data: Vienna local RNA secondary structure record" | Vienna RNALfold output
rocplot_summary | file | "EDAM_data: Receiver operating characteristic (ROC) data" | Rocplot summary
secondary_structure | file | "EDAM_data: Secondary structure" | Secondary structure
scf_file | file | "EDAM_data: SCF assembly project file" | SCF assembly project file
selex | file | "EDAM_data: Multiple sequence alignment record" | Selex alignment
seqalign_input | file | "EDAM_data: EMBASSY domain hits report" | Program seqalign input
seqboot_input | file | "EDAM_data: Phylip bootstrapped sequence data" | Phylip seqboot program input
seqboot_output | file | "EDAM_data: Phylip bootstrapped sequence data" | Phylip seqboot program output
seqbootdisc_output | file | "EDAM_data: PHYLIP discrete states file" | Phylip seqboot_disc program output
seqbootfreq_output | file | "EDAM_data: Phylip bootstrapped sequence data" | Phylip seqboot_freq program output
seqbootrest_output | file | "EDAM_data: Phylip bootstrapped sequence data" | Phylip seqboot_rest program output
seqbootseq_output | file | "EDAM_data: Phylip bootstrapped sequence data" | Phylip seqboot_seq program output
sequence | string | "EDAM_data: Sequence" | Sequence
sequence_data | file | "EDAM_data: Sequence" | Sequence
sequence_fasta | file | "EDAM_data: FASTA record" | Nucleotide or protein sequence in FASTA format
sequence_fasta_set | file | "EDAM_data: FASTA record" | Nucleotide or protein sequences in FASTA format
sequence_id_input | string | "EDAM_data: Sequence unique identifier" | Sequence identifier for an input sequence
sequence_id_list | string | "EDAM_data: List of sequence unique identifiers" | Sequence identifier list or @filename for input sequences
sequence_id_output | string | "EDAM_data: Sequence unique identifier" | Sequence identifier for an output sequence
sequence_mask_character | string | "EDAM_data: Sequence mask character" | Sequence code or space (lowercase) for sequence masking
sequence_overlap | file | | Sequence overlaps
sequence_range | string | "EDAM_data: Sequence position range" | Sequence range in the format nn..nn
sequence_read_quality | file | "EDAM_data: Sequence read quality scores" | Sequence read quality scores
sequence_type | string | "EDAM_data: EMBOSS sequence type" | EMBOSS sequence type
sequence_trace_information | file | "EDAM_data: MIRA sequence trace information file" | Sequence trace information
signature_alignment | file | "EDAM_data: Domainatrix signature alignment report" | Domainatrix signature alignment
sigscanlig_output | file | "EDAM_data: Domainatrix signature alignment report" | Domainatrix sigscanlig program output
sim4_output | file | "EDAM_data: Pairwise hybrid sequence alignment data" | Sim4 program output
sites_log | file | "EDAM_data: EMBOSS sites log file" | Sites log
sort_utility_options | string | "EDAM_data: Generic string" | Command line options for the system sort utility
standard_molecular_weights | file | "EDAM_data: Molecular weights standard fingerprint" | Molecular weight standards
strain_name | string | "EDAM_data: Strain name" | Strain name
stride_log | file | "EDAM_data: STRIDE log file" | Stride program log
string | string | "EDAM_data: Generic string" | Any string value
supermatcher_error | file | "EDAM_data: EMBOSS supermatcher error file" | Program supermatcher errors
swissprot_database | file | "EDAM_data: SwissProt database" | Swissprot-format database
swissprot_pdb_equivalence | file | "EDAM_data: SwissProt to PDB mapping" | Swissprot:pdb equivalence
swissprot_pdb_equivalence_table | file | "EDAM_data: SwissProt to PDB mapping" | Swissprot:pdb equivalence table
tandem_output | file | "EDAM_data: quicktandem repeat sequence map report" | Sanger Centre program tandem output
temporary | file | "EDAM_data: Generic file" | Temporary working
testcode_data | file | "EDAM_data: EMBOSS data file" | Testcode data
text_documentation | file | "EDAM_data: Application bibliographic information" | Program documentation text
threshold_identity_similar_related | array | "EDAM_data: Generic float array" | Three floating point threshold values for identical, similar and related residues
tool_metadata | file | "EDAM_data: Tool metadata" | Tool metadata
translated_cds_sequence | sequence | "EDAM_data: Protein sequence" | Translated coding
transfac_data | file | "EDAM_data: TRANSFAC database" | Transfac database data
transfac_site | file | "EDAM_data: TRANSFAC database" | Transfac database sites
treedist_output | file | "EDAM_data: Phylip phylogenetic tree distance data" | Phylip treedist program output
two_state_characters | discretestates | "EDAM_data: PHYLIP discrete states file" | Two state characters
url_host_address | string | "EDAM_data: URI" | URL host address
url_path | string | "EDAM_data: Directory name" | URL path
url_port | integer | "EDAM_data: URI" | URL port
url_prefix | string | "EDAM_data: URL" | Prefix for all URLs
url_suffix | string | "EDAM_data: URL" | Suffix for all URLs
usa_list | file | "EDAM_data: List of EMBOSS Uniform Sequence Addresses" | List of USAs
van_der_waals_radii | file | "EDAM_data: Amino acid van der Waals data" | Van der waals radii
vector | file | "EDAM_data: vectorstrip cloning vector definition record" | Cloning vector definition
vienna_alignment | file | "EDAM_data: RNA secondary structure alignment data" | Vienna RNA alignment
vienna_dotplot | file | "EDAM_data: Vienna base pairing probability matrix dotplot" | Vienna dotplot postscript
vienna_postscript_alignment | file | "EDAM_data: Sequence alignment image" | Vienna RNA alignment postscript
vienna_structure | file | "EDAM_data: RNA secondary structure image" | Vienna RNA structure postscript
weights | properties | "EDAM_data: Phylogenetic character weights" | Phylip weights
white_wimley_datafile | file | "EDAM_data: Amino acid White-Wimley data" | White-Wimley data
wildcard_string | string | "EDAM_data: Wildcard string" | string with wildcard characters
wordfinder_error | file | "EDAM_data: EMBOSS wordfinder log file" | Program wordfinder errors
wordmatch_log | file | "EDAM_data: EMBOSS wordmatch log file" | Wordmatch log
xml | file | | XML file
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