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#!/bin/csh -f
set db = $argv[1]
cd ~/devemboss
if($db == "edam") then
dbxedam -dir emboss/data -index emboss/index -file EDAM.obo -auto
else if($db == "chebi") then
dbxobo -dir emboss/data/OBO -index emboss/index \
-dbname $db -dbres chebiresource -file $db.obo -auto
else if($db == "swo") then
dbxobo -dir emboss/data/OBO -index emboss/index \
-dbname $db -dbres sworesource -file software.obo -auto
else if($db == "eco") then
dbxobo -dir emboss/data/OBO -index emboss/index \
-dbname $db -dbres oboresource -file eco.obo -auto
else if($db == "go") then
dbxobo -dir emboss/data/OBO -index emboss/index \
-dbname $db -dbres oboresource -file go.obo -auto
else if($db == "pw") then
dbxobo -dir emboss/data/OBO -index emboss/index \
-dbname $db -dbres oboresource -file pathway.obo -auto
else
#ro
#so
dbxobo -dir emboss/data/OBO -index emboss/index \
-dbname $db -dbres oboresource -file $db.obo -auto
endif
if($db == "edam") then
cat outfile.dbxedam
else
cat outfile.dbxobo
endif
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