1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
|
#
# Output from 'compseq'
#
# The Expected frequencies are calculated on the (false) assumption that every
# word has equal frequency.
#
# The input sequences are:
# HSFAU
Word size 3
Total count 516
#
# Word Obs Count Obs Frequency Exp Frequency Obs/Exp Frequency
#
AAA 17 0.0329457 0.0156250 2.1085271
AAC 5 0.0096899 0.0156250 0.6201550
AAG 18 0.0348837 0.0156250 2.2325581
AAT 4 0.0077519 0.0156250 0.4961240
ACA 5 0.0096899 0.0156250 0.6201550
ACC 6 0.0116279 0.0156250 0.7441860
ACG 2 0.0038760 0.0156250 0.2480620
ACT 7 0.0135659 0.0156250 0.8682171
AGA 12 0.0232558 0.0156250 1.4883721
AGC 7 0.0135659 0.0156250 0.8682171
AGG 16 0.0310078 0.0156250 1.9844961
AGT 10 0.0193798 0.0156250 1.2403101
ATA 2 0.0038760 0.0156250 0.2480620
ATC 3 0.0058140 0.0156250 0.3720930
ATG 7 0.0135659 0.0156250 0.8682171
ATT 2 0.0038760 0.0156250 0.2480620
CAA 10 0.0193798 0.0156250 1.2403101
CAC 6 0.0116279 0.0156250 0.7441860
CAG 13 0.0251938 0.0156250 1.6124031
CAT 5 0.0096899 0.0156250 0.6201550
CCA 12 0.0232558 0.0156250 1.4883721
CCC 13 0.0251938 0.0156250 1.6124031
CCG 8 0.0155039 0.0156250 0.9922481
CCT 10 0.0193798 0.0156250 1.2403101
CGA 2 0.0038760 0.0156250 0.2480620
CGC 10 0.0193798 0.0156250 1.2403101
CGG 9 0.0174419 0.0156250 1.1162791
CGT 4 0.0077519 0.0156250 0.4961240
CTA 5 0.0096899 0.0156250 0.6201550
CTC 11 0.0213178 0.0156250 1.3643411
CTG 10 0.0193798 0.0156250 1.2403101
CTT 11 0.0213178 0.0156250 1.3643411
GAA 11 0.0213178 0.0156250 1.3643411
GAC 6 0.0116279 0.0156250 0.7441860
GAG 10 0.0193798 0.0156250 1.2403101
GAT 4 0.0077519 0.0156250 0.4961240
GCA 7 0.0135659 0.0156250 0.8682171
GCC 18 0.0348837 0.0156250 2.2325581
GCG 8 0.0155039 0.0156250 0.9922481
GCT 10 0.0193798 0.0156250 1.2403101
GGA 13 0.0251938 0.0156250 1.6124031
GGC 17 0.0329457 0.0156250 2.1085271
GGG 7 0.0135659 0.0156250 0.8682171
GGT 9 0.0174419 0.0156250 1.1162791
GTA 6 0.0116279 0.0156250 0.7441860
GTC 9 0.0174419 0.0156250 1.1162791
GTG 8 0.0155039 0.0156250 0.9922481
GTT 5 0.0096899 0.0156250 0.6201550
TAA 7 0.0135659 0.0156250 0.8682171
TAC 3 0.0058140 0.0156250 0.3720930
TAG 4 0.0077519 0.0156250 0.4961240
TAT 1 0.0019380 0.0156250 0.1240310
TCA 10 0.0193798 0.0156250 1.2403101
TCC 6 0.0116279 0.0156250 0.7441860
TCG 7 0.0135659 0.0156250 0.8682171
TCT 10 0.0193798 0.0156250 1.2403101
TGA 4 0.0077519 0.0156250 0.4961240
TGC 9 0.0174419 0.0156250 1.1162791
TGG 14 0.0271318 0.0156250 1.7364341
TGT 5 0.0096899 0.0156250 0.6201550
TTA 2 0.0038760 0.0156250 0.2480620
TTC 10 0.0193798 0.0156250 1.2403101
TTG 7 0.0135659 0.0156250 0.8682171
TTT 7 0.0135659 0.0156250 0.8682171
Other 0 0.0000000 0.0000000 10000000000.0000000
|
