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Source: emboss
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Charles Plessy <plessy@debian.org>,
Andreas Tille <tille@debian.org>
Section: science
Priority: optional
Build-Depends: debhelper-compat (= 13),
# javahelper [!hppa] <!nojava>,
libx11-dev,
x11proto-core-dev,
libgdchart-gd2-xpm-dev,
zlib1g-dev,
libpng-dev,
libexpat1-dev,
libhpdf-dev,
default-libmysqlclient-dev,
libpq-dev,
antiword,
sharutils,
tcsh | csh | c-shell,
# Needed until the following is solved: https://sourceforge.net/tracker/?func=detail&aid=3033326&group_id=93650&atid=605031
default-jdk [!hppa] <!nojava>,
ant [!hppa] <!nojava>
# #Build-Depends-Indep: default-jdk
Standards-Version: 4.6.1
Vcs-Browser: https://salsa.debian.org/med-team/emboss
Vcs-Git: https://salsa.debian.org/med-team/emboss.git
Homepage: https://emboss.sourceforge.net
Rules-Requires-Root: no
Package: emboss
Architecture: any
Depends: ${shlibs:Depends},
${misc:Depends},
emboss-lib (= ${binary:Version}),
emboss-data (= ${source:Version})
Recommends: primer3,
dialign
Suggests: emboss-doc,
emboss-test,
embassy,
clustalw
Description: European molecular biology open software suite
EMBOSS is a free Open Source software analysis package specially developed for
the needs of the molecular biology (e.g. EMBnet) user community. The software
automatically copes with data in a variety of formats and even allows
transparent retrieval of sequence data from the web. Also, as extensive
libraries are provided with the package, it is a platform to allow other
scientists to develop and release software in true open source spirit. EMBOSS
also integrates a range of currently available packages and tools for sequence
analysis into a seamless whole. EMBOSS breaks the historical trend towards
commercial software packages.
Package: emboss-data
Architecture: all
Depends: ${misc:Depends}
Multi-Arch: foreign
Description: data files for the EMBOSS package
EMBOSS is a free Open Source software analysis package specially developed for
the needs of the molecular biology (e.g. EMBnet) user community. The software
automatically copes with data in a variety of formats and even allows
transparent retrieval of sequence data from the web. Also, as extensive
libraries are provided with the package, it is a platform to allow other
scientists to develop and release software in true open source spirit. EMBOSS
also integrates a range of currently available packages and tools for sequence
analysis into a seamless whole. EMBOSS breaks the historical trend towards
commercial software packages.
.
This package includes data files needed by EMBOSS, the European Molecular
Biology Open Software Suite.
Package: emboss-doc
Architecture: all
Section: doc
Depends: ${misc:Depends}
Suggests: evince | pdf-viewer | postscript-viewer
Multi-Arch: foreign
Description: documentation for EMBOSS
EMBOSS is a free Open Source software analysis package specially developed for
the needs of the molecular biology (e.g. EMBnet) user community. The software
automatically copes with data in a variety of formats and even allows
transparent retrieval of sequence data from the web. Also, as extensive
libraries are provided with the package, it is a platform to allow other
scientists to develop and release software in true open source spirit. EMBOSS
also integrates a range of currently available packages and tools for sequence
analysis into a seamless whole. EMBOSS breaks the historical trend towards
commercial software packages.
.
This package includes non-essential user documentation for EMBOSS, the
European Molecular Biology Open Software Suite.
Package: emboss-test
Architecture: all
Section: misc
Depends: ${misc:Depends}
Recommends: tcsh | csh | c-shell
Suggests: valgrind
Multi-Arch: foreign
Description: test files for the EMBOSS package
EMBOSS is a free Open Source software analysis package specially developed for
the needs of the molecular biology (e.g. EMBnet) user community. The software
automatically copes with data in a variety of formats and even allows
transparent retrieval of sequence data from the web. Also, as extensive
libraries are provided with the package, it is a platform to allow other
scientists to develop and release software in true open source spirit. EMBOSS
also integrates a range of currently available packages and tools for sequence
analysis into a seamless whole. EMBOSS breaks the historical trend towards
commercial software packages.
.
This package includes test files for EMBOSS, the European Molecular Biology
Open Software Suite.
.
It is a good idea to use the data from this package for your bug reports when
possible.
Package: emboss-lib
Architecture: any
Depends: ${shlibs:Depends},
${misc:Depends}
Conflicts: libajax6,
libajax6-dev,
libnucleus6,
libnucleus6-dev
Replaces: libajax6,
libajax6-dev,
libnucleus6,
libnucleus6-dev
Description: EMBOSS Libraries
This package contains the core libraries of the European Molecular Biology
Open Software Suite, EMBOSS.
.
AJAX covers standard data structures, including strings, sequences, file
handles, queues, hashes, heaps, lists, dictionaries, trees and dynamic
arrays. It also covers standard algorithms including comparisons, pattern
matching, sorting, and iterators. AJAX will also provide a set of high level
graphics functions suited to the needs of sequence analysis applications.
.
The NUCLEUS library provides higher-level functions specific to molecular
sequence analysis, including sequence comparisons, translation, codon usage
and annotation.
.
It also contains a eplplot, an EMBOSS, a fork of the plplot library.
.
In Debian, these libraries are to be considered private.
Package: jemboss
Architecture: all
Build-Profiles: <!nojava>
Depends: ${shlibs:Depends},
${misc:Depends},
emboss,
emboss-data,
default-jre
# libgnujaf-java
Description: graphical user interface to EMBOSS
EMBOSS is a free Open Source software analysis package specially developed for
the needs of the molecular biology (e.g. EMBnet) user community. The software
automatically copes with data in a variety of formats and even allows
transparent retrieval of sequence data from the web. Also, as extensive
libraries are provided with the package, it is a platform to allow other
scientists to develop and release software in true open source spirit. EMBOSS
also integrates a range of currently available packages and tools for sequence
analysis into a seamless whole. EMBOSS breaks the historical trend towards
commercial software packages.
.
Jemboss is a Graphical User Interface (GUI) to EMBOSS, the European Molecular
Biology Open Software Suite. It is part of the EMBOSS distribution.
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