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/* @include ensgvsample *******************************************************
**
** Ensembl Genetic Variation Sample functions
**
** @author Copyright (C) 1999 Ensembl Developers
** @author Copyright (C) 2006 Michael K. Schuster
** @version $Revision: 1.18 $
** @modified 2009 by Alan Bleasby for incorporation into EMBOSS core
** @modified $Date: 2012/08/05 10:59:46 $ by $Author: mks $
** @@
**
** This library is free software; you can redistribute it and/or
** modify it under the terms of the GNU Lesser General Public
** License as published by the Free Software Foundation; either
** version 2.1 of the License, or (at your option) any later version.
**
** This library is distributed in the hope that it will be useful,
** but WITHOUT ANY WARRANTY; without even the implied warranty of
** MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
** Lesser General Public License for more details.
**
** You should have received a copy of the GNU Lesser General Public
** License along with this library; if not, write to the Free Software
** Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston,
** MA 02110-1301, USA.
**
******************************************************************************/
#ifndef ENSGVSAMPLE_H
#define ENSGVSAMPLE_H
/* ========================================================================= */
/* ============================= include files ============================= */
/* ========================================================================= */
#include "ensgvdata.h"
AJ_BEGIN_DECLS
/* ========================================================================= */
/* =============================== constants =============================== */
/* ========================================================================= */
/* ========================================================================= */
/* ============================== public data ============================== */
/* ========================================================================= */
/* ========================================================================= */
/* =========================== public functions ============================ */
/* ========================================================================= */
/*
** Prototype definitions
*/
/* Ensembl Genetic Variation Sample */
EnsPGvsample ensGvsampleNewCpy(const EnsPGvsample gvs);
EnsPGvsample ensGvsampleNewIni(EnsPGvsampleadaptor gvsa,
ajuint identifier,
AjPStr name,
AjPStr description,
EnsEGvsampleDisplay display,
ajuint size);
EnsPGvsample ensGvsampleNewRef(EnsPGvsample gvs);
void ensGvsampleDel(EnsPGvsample *Pgvs);
EnsPGvsampleadaptor ensGvsampleGetAdaptor(const EnsPGvsample gvs);
AjPStr ensGvsampleGetDescription(const EnsPGvsample gvs);
EnsEGvsampleDisplay ensGvsampleGetDisplay(const EnsPGvsample gvs);
ajuint ensGvsampleGetIdentifier(const EnsPGvsample gvs);
AjPStr ensGvsampleGetName(const EnsPGvsample gvs);
ajuint ensGvsampleGetSize(const EnsPGvsample gvs);
AjBool ensGvsampleSetAdaptor(EnsPGvsample gvs, EnsPGvsampleadaptor adaptor);
AjBool ensGvsampleSetDescription(EnsPGvsample gvs, AjPStr description);
AjBool ensGvsampleSetDisplay(EnsPGvsample gvs, EnsEGvsampleDisplay display);
AjBool ensGvsampleSetIdentifier(EnsPGvsample gvs, ajuint identifier);
AjBool ensGvsampleSetName(EnsPGvsample gvs, AjPStr name);
AjBool ensGvsampleSetSize(EnsPGvsample gvs, ajuint size);
size_t ensGvsampleCalculateMemsize(const EnsPGvsample gvs);
AjBool ensGvsampleTrace(const EnsPGvsample gvs, ajuint level);
EnsEGvsampleDisplay ensGvsampleDisplayFromStr(const AjPStr display);
const char *ensGvsampleDisplayToChar(EnsEGvsampleDisplay gvsd);
/* Ensembl Genetic Variation Sample Adaptor */
EnsPGvsampleadaptor ensRegistryGetGvsampleadaptor(
EnsPDatabaseadaptor dba);
EnsPGvsampleadaptor ensGvsampleadaptorNew(
EnsPDatabaseadaptor dba);
void ensGvsampleadaptorDel(EnsPGvsampleadaptor *Pgvsa);
EnsPBaseadaptor ensGvsampleadaptorGetBaseadaptor(
EnsPGvsampleadaptor gvsa);
EnsPDatabaseadaptor ensGvsampleadaptorGetDatabaseadaptor(
EnsPGvsampleadaptor gvsa);
AjBool ensGvsampleadaptorFetchAllbyDisplay(
EnsPGvsampleadaptor gvsa,
EnsEGvsampleDisplay gvsd,
AjPList gvss);
AjBool ensGvsampleadaptorFetchAllbyIdentifiers(
EnsPGvsampleadaptor gvsa,
AjPTable gvss);
AjBool ensGvsampleadaptorFetchByIdentifier(
EnsPGvsampleadaptor gvsa,
ajuint identifier,
EnsPGvsample *Pgvs);
AjBool ensGvsampleadaptorRetrieveAllIdentifiersBySynonym(
EnsPGvsampleadaptor gvsa,
const AjPStr synonym,
const AjPStr source,
AjPList identifiers);
AjBool ensGvsampleadaptorRetrieveAllSynonymsByIdentifier(
EnsPGvsampleadaptor gvsa,
ajuint identifier,
const AjPStr source,
AjPList synonyms);
/*
** End of prototype definitions
*/
AJ_END_DECLS
#endif /* !ENSGVSAMPLE_H */
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