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/** @source taxget
**
** Get taxon(s)
**
** @author Copyright (C) 2011 Peter Rice / EMBOSS
** @version 1 First version</replaceable>
** @modified January 2011 Peter Rice First version</replaceable>
** @@
**
** This program is free software; you can redistribute it and/or
** modify it under the terms of the GNU General Public License
** as published by the Free Software Foundation; either version 2
** of the License, or (at your option) any later version.
**
** This program is distributed in the hope that it will be useful,
** but WITHOUT ANY WARRANTY; without even the implied warranty of
** MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
** GNU General Public License for more details.
**
** You should have received a copy of the GNU General Public License
** along with this program; if not, write to the Free Software
** Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA 02111-1307, USA.
********************************************************************/
/* ==================================================================== */
/* ========================== include files =========================== */
/* ==================================================================== */
#include "emboss.h"
/* Inclusion of system and local header files goes here */
/* ==================================================================== */
/* ============================ constants ============================= */
/* ==================================================================== */
/* #define and enum statements go here */
/* ==================================================================== */
/* ======================== global variables ========================== */
/* ==================================================================== */
/* Global variables definitions go here */
/* ==================================================================== */
/* ============================== data ================================ */
/* ==================================================================== */
/* Definition of datatypes go here */
/* ==================================================================== */
/* ==================== function prototypes =========================== */
/* ==================================================================== */
/* Function prototypes for public (external) functions go here */
/* @prog taxget **************************************************************
**
** Get taxon(s)
**
******************************************************************************/
int main(int argc, char **argv)
{
/* Variable declarations */
AjPOutfile outfile = NULL;
AjPTaxall taxall = NULL;
AjPTax tax = NULL;
AjPTax taxtest = NULL;
AjPList taxlist = ajListNew();
AjPTable foundtable = NULL;
ajuint ifound = 0;
ajuint ikeep = 0;
/* ACD processing */
embInit("taxget", argc, argv);
taxall = ajAcdGetTaxonall("taxons");
outfile = ajAcdGetOuttaxon("outfile");
foundtable = ajTablestrNew(600);
while(ajTaxallNext(taxall, &tax))
{
ajListPushAppend(taxlist, ajTaxNewTax(tax));
while(ajListGetLength(taxlist))
{
ajListPop(taxlist, (void**) &taxtest);
ifound++;
if(!ajTableMatchS(foundtable, taxtest->Id))
{
ajTaxoutWrite(outfile, taxtest);
ajTablePut(foundtable, ajStrNewS(taxtest->Id),
(void *) 1);
ikeep++;
}
ajTaxDel(&taxtest);
}
}
if(!ifound)
ajErr("No matching terms");
/* Memory clean-up and exit */
ajListFree(&taxlist);
ajTaxallDel(&taxall);
ajTaxDel(&tax);
ajOutfileClose(&outfile);
ajTablestrFreeKey(&foundtable);
embExit();
return 0;
}
/* ==================================================================== */
/* ============================ functions ============================= */
/* ==================================================================== */
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