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Jemboss - An Interface To EMBOSS
Copyright (C) 2002 Tim Carver
Jemboss is a Java interface to EMBOSS, developed at
the HGMP-RC and in close collaboration with the EMBOSS
development team. It is distributed as part of the EMBOSS
software.
Documentation on Jemboss can be found at:
http://emboss.sourceforge.net/Jemboss/
It is possible to setup, using the code in the Jemboss
distribution, a Jemboss server for your own site. All
documentation to do with setting up a client or a server
can be found at:
http://emboss.sourceforge.net/Jemboss/install/setup.html
This is an on-going development and comments and suggestions
are welcome.
Tim Carver tjc@sanger.ac.uk
Change Log:
---------------------------------------------------
January 2010
* Integrated Jalview editor upgraded to the latest JalviewLite (version 2.4)
30-June-2009
* better integration with EMBOSS makefiles,
standalone jemboss installed by default when emboss installed
03-July-2008
* Jemboss and BuildProgramMenu classes were refactored with GUI improvements
24-Jun-2008
* context sensitive popup menu items in remote and local file managers
20-Jun-2008
* When the user.home property has its default value and the operating system
is windows jemboss user-home directory is set to ${EMBOSS_ROOT}\${user.name},
similarly the jemboss results-home directory is set to
${EMBOSS_ROOT}\${user.name}\results\
18-Jun-2008
* "Save between Jemboss sessions" option is now selected by default
* fixed a problem with saving the "results.home" property
* loading and storing jemboss.properties files was updated by
using functions from java.util.Properties class
* replaced the "Calculate sequence attributes" menu option
by "Get sequence lengths automatically" checkbox in SequenceList frame,
(sequence lengths are not calculated if the entry is an existing file)
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