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Description: Fix spelling
Author: Andreas Tille <tille@debian.org>
Last-Update: 2018-10-13
--- a/README.txt
+++ b/README.txt
@@ -37,7 +37,7 @@ where posix-options are:
-p +- Turn hits postprocess on/off
-v +- Verbose on/Off
-a a|f Use presize alignmens (only if gaps>0), slow
- a - Allways or f - as Fallback
+ a - Always or f - as Fallback
-x +- Use 5'-end lowercase masking of primers (default -)
-u +- Uppercase all primers (default -)
and compat-options (duplicate posix-options) are:
@@ -52,7 +52,7 @@ and compat-options (duplicate posix-opti
P=+- Postprocess hits on/off
V=+- Verbose on/Off
A=a|f Use presize alignmens (only if gaps>0), slow
- a - Allways or f - as Fallback
+ a - Always or f - as Fallback
X=+- Use 5'-end lowercase masking of primers (default -)
U=+- Uppercase all primers (default -)
-mid Same as T=2
--- a/e-PCR_main.cpp
+++ b/e-PCR_main.cpp
@@ -126,7 +126,7 @@ int CMain::Help(FILE* out)
fprintf(out,"\t-p +-\tTurn hits postprocess on/off\n");
fprintf(out,"\t-v ##\tVerbosity flags\n");
fprintf(out,"\t-a a|f\tUse presize alignmens (only if gaps>0), slow\n"
- "\t\t a - Allways or f - as Fallback\n");
+ "\t\t a - Always or f - as Fallback\n");
fprintf(out,"\t-x +-\tUse 5'-end lowercase masking of primers "
"(default %s)\n",stsFileHash.AllowOverhang()?"+":"-");
fprintf(out,"\t-u +-\tUppercase all primers "
@@ -149,7 +149,7 @@ int CMain::Help(FILE* out)
fprintf(out,"\tP=+-\tPostprocess hits on/off\n");
fprintf(out,"\tV=##\tVerbosity flags\n");
fprintf(out,"\tA=a|f\tUse presize alignmens (only if gaps>0), slow\n"
- "\t\t a - Allways or f - as Fallback\n");
+ "\t\t a - Always or f - as Fallback\n");
fprintf(out,"\tX=+-\tUse 5'-end lowercase masking of primers "
"(default %s)\n",stsFileHash.AllowOverhang()?"+":"-");
fprintf(out,"\tU=+-\tUppercase all primers "
--- a/famap_main.cpp
+++ b/famap_main.cpp
@@ -75,7 +75,7 @@ int CMain::Help(FILE* out)
fprintf(out,"usage: [-hV] -b mmapped-file [-t cvt] [fafile ...]\n");
fprintf(out," or: [-hV] -d mmapped-file [ord ...]\n");
fprintf(out," or: [-hV] -l mmapped-file [ord ...]\n");
- fprintf(out,"where cvt (convertion table) is one of:\n"
+ fprintf(out,"where cvt (conversion table) is one of:\n"
"\toff - as is (default)\n"
"\tn - nucleotide [acgtnACGTN] allowed,\n"
"\tN - nucleotide uppercase allowed [ACGTN]\n"
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