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/* $Id: build_cfg.h,v 1.13 2008/03/26 16:04:29 rotmistr Exp $
* ===========================================================================
*
* PUBLIC DOMAIN NOTICE
* National Center for Biotechnology Information
*
* This software/database is a "United States Government Work" under the
* terms of the United States Copyright Act. It was written as part of
* the author's official duties as a United States Government employee and
* thus cannot be copyrighted. This software/database is freely available
* to the public for use. The National Library of Medicine and the U.S.
* Government have not placed any restriction on its use or reproduction.
*
* Although all reasonable efforts have been taken to ensure the accuracy
* and reliability of the software and data, the NLM and the U.S.
* Government do not and cannot warrant the performance or results that
* may be obtained by using this software or data. The NLM and the U.S.
* Government disclaim all warranties, express or implied, including
* warranties of performance, merchantability or fitness for any particular
* purpose.
*
* Please cite the author in any work or product based on this material.
*
* =========================================================================
*
* Author: Kirill Rotmistrovsky
*
* ========================================================================= */
#ifndef EPCR_BUILD__HPP
#define EPCR_BUILD__HPP
#ifdef STANDALONE
#include <sys/types.h>
namespace std {}
#define BEGIN_SCOPE(a) namespace a {
#define END_SCOPE(a) }
#define BEGIN_NCBI_SCOPE BEGIN_SCOPE(ncbi) USING_SCOPE(std);
#define END_NCBI_SCOPE END_SCOPE(ncbi)
#define USING_SCOPE(a) using namespace a
#define USING_NCBI_SCOPE USING_SCOPE(ncbi)
#ifdef _WIN32
#include <epcr/mswin.h>
#define FILE_BINARY "b"
#define FILE_TEXT "t"
//#warning "Using Borland C/C++ Builder config"
#define madvise(a,b,c) // no madvise
#define MADV_SEQUENTIAL 0
#define MADV_DONTNEED 0
#ifdef __cplusplus
BEGIN_NCBI_SCOPE
#endif
typedef char Int1;
typedef short Int2;
typedef int Int4;
typedef long long Int8;
typedef unsigned char Uint1;
typedef unsigned short Uint2;
typedef unsigned int Uint4;
typedef unsigned long long Uint8;
#ifdef __cplusplus
END_NCBI_SCOPE
#endif
#else // _WIN32
#include <unistd.h>
#include <sys/mman.h>
#include <sys/fcntl.h>
#ifdef NATIVE_LARGEFILES
#include <epcr/native64.h>
#endif // NATIVE_LARGEFILES
#include <stdint.h>
#ifdef __cplusplus
BEGIN_NCBI_SCOPE
#endif
typedef int8_t Int1;
typedef int16_t Int2;
typedef int32_t Int4;
typedef int64_t Int8;
typedef uint8_t Uint1;
typedef uint16_t Uint2;
typedef uint32_t Uint4;
typedef uint64_t Uint8;
#ifdef __cplusplus
END_NCBI_SCOPE
#endif
#ifdef __cplusplus
extern "C" {
#endif // __cplusplus
int madvise(void* addr, size_t len, int advice);
#ifdef __cplusplus
}
#endif // __cplusplus
#endif // _WIN32
#else // STANDALONE
#include <corelib/ncbistd.hpp>
#include <unistd.h>
#include <sys/mman.h>
#include <sys/fcntl.h>
#endif // STANDALONE
#define EPCR_SCOPE pcr_tools
#ifndef FILE_BINARY
#define FILE_BINARY
#endif
#ifndef FILE_TEXT
#define FILE_TEXT
#endif
#endif
/*
* $Log: build_cfg.h,v $
* Revision 1.13 2008/03/26 16:04:29 rotmistr
* Added support for blastdb files
*
* Revision 1.12 2007/07/11 20:49:29 rotmistr
* Made 64bit-compatible
*
* Revision 1.11 2007/07/05 16:23:08 rotmistr
* Forgot two changes
*
* Revision 1.10 2007/07/05 16:05:58 rotmistr
* Made things compileable by MS Visual C++ 8.0
*
* Revision 1.9 2004/09/03 21:28:49 rotmistr
* Fixes to compile with Borland C++ 5.5
*
* Revision 1.8 2004/09/03 15:54:43 rotmistr
* Compilation for Mac OS/X
*
* Revision 1.7 2004/05/27 20:35:46 rotmistr
* Version 2.1.0 with appropriate changes (see Changes) is ready for tests.
*
* Revision 1.6 2004/04/15 14:18:22 rotmistr
* Fix to compile with NCBI toolkit (CGI)
*
* Revision 1.5 2004/04/06 04:53:17 rotmistr
* All is compileable with BCC5.5 and runnable on WIndows
*
* Revision 1.4 2004/04/01 16:37:40 rotmistr
* Cleaned after adding windows capabilities
*
* Revision 1.3 2004/04/01 05:57:52 rotmistr
* Compilable with borland C++
*
* Revision 1.2 2004/02/04 21:23:21 rotmistr
* - gcc-3.3.2 compatible
* - better postfiltering for reverse-e-PCR for discontiguos words
* - cgi added, that supports:
* -- contig to chromosome mapping
* -- simple mapviewer links
* -- unists links
* -- discontiguos words
*
* Revision 1.1.1.1 2003/12/23 18:17:27 rotmistr
* Package that includes e-PCR, reverse e-PCR, and sequence data preparation
* program for reverse e-PCR looks ready
*
*/
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