File: spelling.patch

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Description: Fix spelling
Author: Andreas Tille <tille@debian.org>
Last-Update: Sat, 13 Oct 2018 23:57:40 +0200

--- a/README.txt
+++ b/README.txt
@@ -37,7 +37,7 @@ where posix-options are:
         -p +-   Turn hits postprocess on/off
         -v +-   Verbose on/Off
         -a a|f  Use presize alignmens (only if gaps>0), slow
-                 a - Allways or f - as Fallback
+                 a - Always or f - as Fallback
         -x +-   Use 5'-end lowercase masking of primers (default -)
         -u +-   Uppercase all primers (default -)
 and compat-options (duplicate posix-options) are:
@@ -52,7 +52,7 @@ and compat-options (duplicate posix-opti
         P=+-    Postprocess hits on/off
         V=+-    Verbose on/Off
         A=a|f   Use presize alignmens (only if gaps>0), slow
-                 a - Allways or f - as Fallback
+                 a - Always or f - as Fallback
         X=+-    Use 5'-end lowercase masking of primers (default -)
         U=+-    Uppercase all primers (default -)
         -mid    Same as T=2
--- a/e-PCR_main.cpp
+++ b/e-PCR_main.cpp
@@ -126,7 +126,7 @@ int CMain::Help(FILE* out)
 	fprintf(out,"\t-p +-\tTurn hits postprocess on/off\n");
     fprintf(out,"\t-v ##\tVerbosity flags\n");
     fprintf(out,"\t-a a|f\tUse presize alignmens (only if gaps>0), slow\n"
-            "\t\t a - Allways or f - as Fallback\n");
+            "\t\t a - Always or f - as Fallback\n");
     fprintf(out,"\t-x +-\tUse 5'-end lowercase masking of primers "
             "(default %s)\n",stsFileHash.AllowOverhang()?"+":"-");
     fprintf(out,"\t-u +-\tUppercase all primers "
@@ -149,7 +149,7 @@ int CMain::Help(FILE* out)
 	fprintf(out,"\tP=+-\tPostprocess hits on/off\n");
 	fprintf(out,"\tV=##\tVerbosity flags\n");
     fprintf(out,"\tA=a|f\tUse presize alignmens (only if gaps>0), slow\n"
-            "\t\t a - Allways or f - as Fallback\n");
+            "\t\t a - Always or f - as Fallback\n");
     fprintf(out,"\tX=+-\tUse 5'-end lowercase masking of primers "
             "(default %s)\n",stsFileHash.AllowOverhang()?"+":"-");
     fprintf(out,"\tU=+-\tUppercase all primers "
--- a/famap_main.cpp
+++ b/famap_main.cpp
@@ -75,7 +75,7 @@ int CMain::Help(FILE* out)
 	fprintf(out,"usage: [-hV] -b mmapped-file [-t cvt] [fafile ...]\n");
 	fprintf(out,"   or: [-hV] -d mmapped-file [ord ...]\n");
 	fprintf(out,"   or: [-hV] -l mmapped-file [ord ...]\n");
-	fprintf(out,"where cvt (convertion table) is one of:\n"
+	fprintf(out,"where cvt (conversion table) is one of:\n"
 			"\toff - as is (default)\n"
 			"\tn   - nucleotide [acgtnACGTN] allowed,\n"
 			"\tN   - nucleotide uppercase allowed [ACGTN]\n"