ó
&¯cSc           @   sw   d  d l  m Z m Z d  d l Z d  d l Z d  d l Td  d l Z d  d l m	 Z	 d  d l
 Z
 d d d „  ƒ  YZ d S(   iÿÿÿÿ(   t   minidomt   NodeN(   t   *(   t
   json_grapht   Spreadc           B   sM   e  Z d  d d „ Z d „  Z d d „ Z e e ƒ Z d „  Z e e ƒ Z RS(   t   .s   utf-8c         C   sË   | |  _  t j ƒ  |  _ | |  _ | |  _ |  j ƒ  t j |  j t j	 j
 | d ƒ d | ƒt j |  j t j	 j
 | d ƒ ƒ t j |  j ƒ } t t j	 j
 | d ƒ d ƒ  } t j | | ƒ Wd  QXd  S(   Ns   spread.graphmlt   encodings
   spread.gmls   spread.jsont   w(   t   gt   nxt   MultiDiGrapht   nxgt   outdirR   t   create_treet   write_graphmlt   ost   patht   joint	   write_gmlR   t   node_link_datat   opent   jsont   dump(   t   selft   graphobjR   R   t   nlt   f(    (    sL   /home/fccoelho/Documentos/Projects_Software/epigrass-code/Epigrass/spread.pyt   __init__   s    			
("!c         C   s£   xœ |  j  j D]Ž } |  j  j | d } | d } |  j j | d d | j d | d ƒx@ | j ƒ  D]2 \ } } |  j j | d | j d t	 | ƒ ƒqe Wq Wd S(   si   
        Generates a unambiguous spread tree by selecting the most likely infector for each site
        i   iÿÿÿÿt   namet   timei    t   weightN(
   R   t   epipatht	   site_dictR   t   add_nodet   sitenamet	   iteritemst   add_edget   geocodet   float(   R   t   nt   infectedt	   infectorst   it   c(    (    sL   /home/fccoelho/Documentos/Projects_Software/epigrass-code/Epigrass/spread.pyR       s    
's   spreadtree.gmlc         C   s‡   y t  j | ƒ Wn n Xt |  ƒ t j | d | ƒ } | j d d d d g ƒ t j | | ƒ | j d ƒ | j	 ƒ  d | GHd S(	   s1   
        Save the tree in the GML format
        R   s   Creator "Epigrass"
s   Version ""
s   graph
[
s/   	hierarchic	1
	label	"Spread Tree"
	directed	1
t   ]s   Wrote %sN(
   R   t   chdirt   dirt   codecsR   t
   writelinesR   t
   writeENGMLt   writet   close(   R   t   treeR   R   t   fnameR   (    (    sL   /home/fccoelho/Documentos/Projects_Software/epigrass-code/Epigrass/spread.pyt   writeGML-   s    
	

c      
   C   sÊ  | } t  g  t | ƒ D] \ } } | d | f ^ q ƒ } x* t | j ƒ  ƒ D] \ } } | | | <qN Wx£ | j ƒ  D]• \ } } | j d d g ƒ | j d | d | g ƒ | j d d d d	 g ƒ | j d
 d d d g ƒ | j d d d | d d d d d g ƒ qu Wxµ t | ƒ D]§ \ } } t | d ƒ } | | d }	 y | | d }
 Wn t k
 rmqn X| j d d g ƒ | j d |
 d |	 d | d d g ƒ | j d d d d g ƒ qWd S(   sA   
        Write the edges and Nodes section of a GML file
        i   s   	node
s   	[
s   		id	%s
s   		label	"%s"
s   		graphics
s   		[
s   			w	60
s   			h	30
s   			type	"roundrectangle"
s   			fill	"#FFCC00"
s   			outline	"#000000"
s   		]
s   		LabelGraphics
s   			text	"%s"
s   			fontSize	13
s   			fontName	"Dialog"
s   			anchor	"c"
s   	]
i    i   s   	edge
s   		source	%s
s   		target	%s
s   			fill	"#000000"
s   			targetArrow	"standard"
N(   t   dictt	   enumeratet   iterkeysR#   R0   t   strt   KeyError(   R   t   fobjR4   R   R'   R*   t   nodest   kt   labt   tidt   sid(    (    sL   /home/fccoelho/Documentos/Projects_Software/epigrass-code/Epigrass/spread.pyR1   D   s(    5-((   t   __name__t
   __module__R   R   R6   t   classmethodR1   (    (    (    sL   /home/fccoelho/Documentos/Projects_Software/epigrass-code/Epigrass/spread.pyR      s   		(    (   t   xml.domR    R   R   R   t   numpyt   networkxR	   t   networkx.readwriteR   R/   R   (    (    (    sL   /home/fccoelho/Documentos/Projects_Software/epigrass-code/Epigrass/spread.pyt   <module>	   s   
