1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283 284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301 302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319 320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337 338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355 356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371 372 373 374 375
|
/* Ergo, version 3.5, a program for linear scaling electronic structure
* calculations.
* Copyright (C) 2016 Elias Rudberg, Emanuel H. Rubensson, Pawel Salek,
* and Anastasia Kruchinina.
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any later version.
*
* This program is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License
* along with this program. If not, see <http://www.gnu.org/licenses/>.
*
* Primary academic reference:
* KohnâSham Density Functional Theory Electronic Structure Calculations
* with Linearly Scaling Computational Time and Memory Usage,
* Elias Rudberg, Emanuel H. Rubensson, and Pawel Salek,
* J. Chem. Theory Comput. 7, 340 (2011),
* <http://dx.doi.org/10.1021/ct100611z>
*
* For further information about Ergo, see <http://www.ergoscf.org>.
*/
/** @file xcmat_test.cc Tests the DFT XC matrix construction.
This test computes the XC energy many times and checks that the
resulting energy is the same every time. If this fails, it is
probably because of some bug related to synchronization
of threads.
*/
#include <stdio.h>
#include <unistd.h>
#include <memory>
#include <limits>
#include "integrals_1el_potential.h"
#include "integrals_2el.h"
#include "memorymanag.h"
#include "grid_reader.h"
#include "dft_common.h"
#include "xc_matrix.h"
static bool
compare_matrices(char mat_name,
const real *computed, const long double *ref, int sz,
ergo_real eps)
{
bool failed = false;
for(int row=0; row<sz; row++) {
for(int col=0; col<sz; col++)
if (std::fabs(computed[row + col*sz]- ref[row+col*sz])>eps) {
printf("%c (%d,%d): ref: %28.25Lf got: %28.25Lf diff: %12g eps: %g\n",
mat_name, row, col,
(long double)ref[row + col*sz],
(long double)computed[row + col*sz],
(double)(computed[row + col*sz]- ref[row+col*sz]),
(double)eps);
failed = true;
}
}
return failed;
}
static int
test_small(const IntegralInfo& ii, const char *functional,
const Dft::GridParams::RadialScheme& gridScheme,
const char *gridSchemeName,
const int *charges, const real (*coords)[3],
const long double (*XCRef)[2])
{
BasisInfoStruct* bis = new BasisInfoStruct();
Molecule m;
/* The code later will change the order of atoms, this is why the
reference table may seem strange at the first sight. */
for(int i=0; i<2; i++) {
m.addAtom(charges[i], coords[i][0],coords[i][1],coords[i][2]);
}
if(bis->addBasisfuncsForMolecule(m, ERGO_SPREFIX "/basis/STO-3G",
0, NULL, ii, 0, 0, 0) != 0) {
printf("bis->addBasisfuncsForMolecule failed.\n");
return 1;
}
int n = bis->noOfBasisFuncs;
/* set up density matrix */
ergo_real *dmat= ergo_new(n*n, ergo_real);
dmat[0*n+0] = 1.1; dmat[0*n+1] = 0.2;
dmat[1*n+0] = 0.2; dmat[1*n+1] = 1.3;
dft_init();
if(dft_setfunc(functional) == 0)
{
printf("error in dft_setfunc\n");
return 1;
}
grid_set_tmpdir("/tmp");
static const ergo_real GRID_CELL_SIZE = 2.5;
Dft::GridParams gridParams(1e-5, 6, 7, GRID_CELL_SIZE);
gridParams.radialGridScheme = gridScheme;
ergo_real *xcmat= ergo_new(n*n, ergo_real);
ergo_real *xca = ergo_new(n*n, ergo_real);
ergo_real *xcb = ergo_new(n*n, ergo_real);
ergo_real *dmata = ergo_new(n*n, ergo_real);
for(int i=n*n-1; i>=0; --i) dmata[i] = 0.5*dmat[i];
int noOfElectrons = 2;
char mode;
ergo_real dftEnergy = 0;
dft_get_xc_mt(noOfElectrons, dmat, bis, &m, gridParams, xcmat, &dftEnergy);
/* We give some room to accumulation error. */
static const ergo_real EPS = std::numeric_limits<ergo_real>::epsilon()*
(sizeof(ergo_real) == sizeof(ergo_long_real) ? 230 : 20);
int nrepeat = 2;
bool failed = false;
for(int i = 0; i < nrepeat; i++)
{
mode = 'R';
ergo_real dftEnergyAgain = 0, electronsR, electronsU, dftEnergyU;
memset(xcmat, 0, n*n*sizeof(ergo_real));
electronsR = dft_get_xc_mt(noOfElectrons, dmat, bis, &m, gridParams,
xcmat, &dftEnergyAgain);
failed = compare_matrices('R', xcmat, &XCRef[0][0], n, EPS);
if(std::fabs(dftEnergyAgain - dftEnergy) > EPS)
{
printf("%s/%s energy repeatability test failed.\n",
selected_func->is_gga() ? "GGA" : "LDA", functional);
printf("i = %5i of %5i: computed: %20.19f diff: %g\n",
i, nrepeat,
(double)dftEnergyAgain, (double)(dftEnergy-dftEnergyAgain));
failed = true;
}
if(failed)
break;
mode = 'U';
memset(xca, 0, n*n*sizeof(ergo_real));
memset(xcb, 0, n*n*sizeof(ergo_real));
electronsU = dft_get_uxc_mt(noOfElectrons,
dmata, dmata,
bis, &m, gridParams,
xca, xcb, &dftEnergyU);
failed = compare_matrices('A', xca, &XCRef[0][0], n, EPS)
|| compare_matrices('B', xcb, &XCRef[0][0], n, EPS);
if (std::fabs(electronsU - electronsR) > EPS) {
printf("%s/%s Electrons restricted %28.25Lg unrestricted %28.25Lg\n",
selected_func->is_gga() ? "GGA" : "LDA", functional,
(long double)electronsR,
(long double)electronsU);
}
if(failed)
break;
}
ergo_free(dmat);
ergo_free(dmata);
ergo_free(xcmat);
ergo_free(xca);
ergo_free(xcb);
grid_free_files();
delete bis;
printf("%cXC %s %s/%s test %s\n", failed ? mode : ' ',
gridSchemeName,
selected_func->is_gga() ? "GGA" : "LDA",
functional, failed ? "failed" : "OK");
if(!failed)
unlink("ergoscf.out");
return failed ? 1 : 0;
}
static int
test_small_both()
{
int res = 0;
IntegralInfo ii(true);
static const int sys1Z[2] = { 2, 1 };
static const ergo_real sys1C[2][3] = { { 0, 0, 0 }, { 0, 0, 1.5 } };
#if 0
/* these used to work at some point in time */
static const long double XCRefSys1Svwn5_GC2[2][2] = {
{ -0.4684689023709603356666539L, -0.2774104719817796799879745L },
{ -0.2774104719817796799879745L, -0.6305248743996174761393923L }
};
static const long double XCRefSys1Svwn5_Turbo[2][2] = {
{ -0.4683770126432161890915259L, -0.2773048168955870736141454L },
{ -0.2773048168955870736141454L, -0.6306586344434581195149588L }
};
static const long double XCRefSys1Svwn5_LMG[2][2] = {
{ -0.4684708993939939889676171L, -0.2773291661077663829268383L },
{ -0.2773291661077663829268383L, -0.6307497031343927392844396L }
};
#else
/* gcc version 4.5.1 20100924 (Red Hat 4.5.1-4) (GCC) on x86_64
yields different long double results! */
static const long double XCRefSys1Svwn5_GC2[2][2] = {
{ -0.4684689023709603142536610L, -0.2774104719817796595236585L },
{ -0.2774104719817796595236585L, -0.6305248743996173615934328L }
};
static const long double XCRefSys1Svwn5_Turbo[2][2] = {
{ -0.4683770126432162286649052L, -0.2773048168955870872208827L },
{ -0.2773048168955870872208827L, -0.6306586344434580992403781L }
};
static const long double XCRefSys1Svwn5_LMG[2][2] = {
{ -0.4684708993939940416869477L, -0.2773291661077664115226706L },
{ -0.2773291661077664115226706L, -0.6307497031343927669315950L }
};
#endif
res += test_small(ii, "SVWN5", Dft::GridParams::GC2, "GC2 ",
sys1Z, sys1C, &XCRefSys1Svwn5_GC2[0]);
res += test_small(ii, "SVWN5", Dft::GridParams::TURBO, "Turbo",
sys1Z, sys1C, &XCRefSys1Svwn5_Turbo[0]);
res += test_small(ii, "SVWN5", Dft::GridParams::LMG, "LMG ",
sys1Z, sys1C, &XCRefSys1Svwn5_LMG[0]);
#if 0
/* these used to work at some point in time */
static const long double XCRefSys1BP86_LMG[2][2] = {
{ -0.4845632120229973237648946L, -0.2847735431952788480978751L },
{ -0.2847735431952788480978751L, -0.6585688897912137575196313L }
};
static const long double XCRefSys1BP86_TURBO[2][2] = {
{ -0.4844723531473195265333910L, -0.2847608922553022243432004L },
{ -0.2847608922553022243432004L, -0.6584790455338923006230883L }
};
#else
/* gcc version 4.5.1 20100924 (Red Hat 4.5.1-4) (GCC) on x86_64
yields different long double results! */
static const long double XCRefSys1BP86_LMG[2][2] = {
{ -0.4845632120229973761047545L, -0.2847735431952788756637153L },
{ -0.2847735431952788756637153, -0.6585688897912137838657441L }
};
static const long double XCRefSys1BP86_TURBO[2][2] = {
{ -0.4844723531473195618241717L, -0.2847608922553022361067940L },
{ -0.2847608922553022361067940L, -0.6584790455338922763911698L }
};
#endif
res += test_small(ii, "BP86", Dft::GridParams::LMG, "LMG ",
sys1Z, sys1C, &XCRefSys1BP86_LMG[0]);
res += test_small(ii, "BP86", Dft::GridParams::TURBO, "Turbo",
sys1Z, sys1C, &XCRefSys1BP86_TURBO[0]);
static const int sys2Z[2] = { 2, 1 };
static const ergo_real sys2C[2][3] = { { 0, 0, 0 }, { 0, 0, 20.0 } };
#if 0
/* these used to work at some point in time */
static const long double XCRefSys2Combine[2][2] = {
{ -0.4158158686905108041562736L, 0.0 },
{ 0.0, -0.5837174604663345164109328L }
};
static const long double XCRefSys2Blyp[2][2] = {
{ -0.4355159681263079985444418L, 0.0 },
{ 0.0, -0.6158981042254555345592283L }
};
#else
/* gcc version 4.5.1 20100924 (Red Hat 4.5.1-4) (GCC) on x86_64
yields different long double results! */
/* these used to work at some point in time */
static const long double XCRefSys2Combine[2][2] = {
{ -0.4158158686905108421575598L, 0.0 },
{ 0.0, -0.5837174604663345243256087L }
};
static const long double XCRefSys2Blyp[2][2] = {
{ -0.4355159681263080390122878L, 0.0 },
{ 0.0, -0.6158981042254555427991648L }
};
#endif
res += test_small(ii, "Combine Slater=1 PZ81=1",
Dft::GridParams::LMG, "LMG ",
sys2Z, sys2C, &XCRefSys2Combine[0]);
res += test_small(ii, "BLYP", Dft::GridParams::LMG, "LMG ",
sys2Z, sys2C, &XCRefSys2Blyp[0]);
return res;
}
static int
test_mol(const char *mol_fname, const char *basisSet, const char *xcFunc)
{
unlink("ergoscf.out");
dft_init();
Molecule m;
if(m.setFromMoleculeFile(mol_fname, 0, NULL) != 0) {
printf("Molecule::setFromMoleculeFile failed.\n");
return 1;
}
IntegralInfo biBasic(true);
BasisInfoStruct *bis = new BasisInfoStruct();
if(bis->addBasisfuncsForMolecule(m, basisSet, 0, NULL,
biBasic, 0, 1, 0) != 0) {
printf("bis->addBasisfuncsForMolecule failed.\n");
delete bis;
return 1;
}
int n = bis->noOfBasisFuncs;
/* Set up density matrix. Equivalent to use_simple_starting_guess. */
ergo_real *dmat= ergo_new(n*n, ergo_real);
int noOfElectrons = m.getNumberOfElectrons();
real diag = noOfElectrons/ergo_real(n);
for(int col=0; col<n; col++) {
for(int row=0; row<n; row++)
dmat[row+n*col] = 0.0;
dmat[col+n*col] = diag;
}
if(dft_setfunc(xcFunc) == 0) {
fprintf(stderr, "Error in dft_setfunc(%s)\n", xcFunc);
return 1;
}
grid_set_tmpdir("/tmp");
static const int ANGMIN = 6;
static const int ANGINT = 35;
static const real RADINT = 1e-7;
Dft::GridParams gridParams(RADINT, ANGMIN, ANGINT);
ergo_real *xcmat= ergo_new(n*n, ergo_real);
ergo_real dftEnergy = 0;
ergo_real integratedNoOfElectrons =
dft_get_xc_mt(noOfElectrons, dmat, bis, &m, gridParams, xcmat, &dftEnergy);
ergo_free(dmat);
ergo_free(xcmat);
grid_free_files();
delete bis;
printf("%s/%s benchmark executed. "
"Expected %d electrons. Integrated %f\n",
selected_func->is_gga() ? "GGA" : "LDA",
xcFunc, noOfElectrons, (double)integratedNoOfElectrons);
return 0;
}
int main(int argc, char *argv[])
{
const char *DEFAULT_XC_FUNC = "BP86";
if(argc<=1)
return test_small_both();
else if(argc==2)
return test_mol(argv[1], ERGO_SPREFIX "/basis/Turbomole-SVP",
DEFAULT_XC_FUNC);
else if(argc==3)
return test_mol(argv[1], argv[2], DEFAULT_XC_FUNC);
else if(argc==4)
return test_mol(argv[1], argv[2], argv[3]);
else {
fputs("Usage: xcmat_test [MOL_FILE [BASIS_SET]].\n", stderr);
return 1;
}
/* Not reached */
return 0;
}
|