1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283 284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301 302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319 320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337 338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355 356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371 372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389 390 391 392 393 394 395 396 397 398 399 400 401 402 403 404 405 406 407 408 409 410 411 412 413 414 415 416 417 418 419 420 421 422 423 424 425 426 427 428 429 430 431 432 433 434 435 436 437 438 439 440 441 442 443 444 445 446 447 448 449 450 451 452 453 454 455 456 457 458 459 460 461 462 463 464 465 466 467 468 469 470 471 472 473 474 475 476 477 478 479 480 481 482 483 484 485 486 487 488 489 490 491 492 493 494 495 496 497 498 499 500 501 502 503 504 505 506 507 508 509 510 511 512 513 514 515 516 517 518 519 520 521 522 523 524 525 526 527 528 529 530 531 532 533 534 535 536 537 538 539 540 541 542 543 544 545 546 547 548 549 550 551 552 553 554 555 556 557 558 559 560 561 562 563 564 565 566 567 568 569 570
|
This is pdfTeX, Version 3.1415926-2.4-1.40.13 (TeX Live 2012/Debian) (format=pdflatex 2013.10.8) 28 MAY 2014 16:43
entering extended mode
restricted \write18 enabled.
%&-line parsing enabled.
**plumed_quick_ref.tex
(./plumed_quick_ref.tex
LaTeX2e <2011/06/27>
Babel <v3.8m> and hyphenation patterns for english, dumylang, nohyphenation, it
alian, loaded.
(/usr/share/texlive/texmf-dist/tex/latex/base/article.cls
Document Class: article 2007/10/19 v1.4h Standard LaTeX document class
(/usr/share/texlive/texmf-dist/tex/latex/base/size12.clo
File: size12.clo 2007/10/19 v1.4h Standard LaTeX file (size option)
)
\c@part=\count79
\c@section=\count80
\c@subsection=\count81
\c@subsubsection=\count82
\c@paragraph=\count83
\c@subparagraph=\count84
\c@figure=\count85
\c@table=\count86
\abovecaptionskip=\skip41
\belowcaptionskip=\skip42
\bibindent=\dimen102
)
(/usr/share/texlive/texmf-dist/tex/latex/amsfonts/amssymb.sty
Package: amssymb 2009/06/22 v3.00
(/usr/share/texlive/texmf-dist/tex/latex/amsfonts/amsfonts.sty
Package: amsfonts 2009/06/22 v3.00 Basic AMSFonts support
\@emptytoks=\toks14
\symAMSa=\mathgroup4
\symAMSb=\mathgroup5
LaTeX Font Info: Overwriting math alphabet `\mathfrak' in version `bold'
(Font) U/euf/m/n --> U/euf/b/n on input line 96.
))
(/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty
Package: graphicx 1999/02/16 v1.0f Enhanced LaTeX Graphics (DPC,SPQR)
(/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty
Package: keyval 1999/03/16 v1.13 key=value parser (DPC)
\KV@toks@=\toks15
)
(/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty
Package: graphics 2009/02/05 v1.0o Standard LaTeX Graphics (DPC,SPQR)
(/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty
Package: trig 1999/03/16 v1.09 sin cos tan (DPC)
)
(/usr/share/texlive/texmf-dist/tex/latex/latexconfig/graphics.cfg
File: graphics.cfg 2010/04/23 v1.9 graphics configuration of TeX Live
)
Package graphics Info: Driver file: pdftex.def on input line 91.
(/usr/share/texlive/texmf-dist/tex/latex/pdftex-def/pdftex.def
File: pdftex.def 2011/05/27 v0.06d Graphics/color for pdfTeX
(/usr/share/texlive/texmf-dist/tex/generic/oberdiek/infwarerr.sty
Package: infwarerr 2010/04/08 v1.3 Providing info/warning/error messages (HO)
)
(/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ltxcmds.sty
Package: ltxcmds 2011/11/09 v1.22 LaTeX kernel commands for general use (HO)
)
\Gread@gobject=\count87
))
\Gin@req@height=\dimen103
\Gin@req@width=\dimen104
)
(/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref.sty
Package: hyperref 2012/05/13 v6.82q Hypertext links for LaTeX
(/usr/share/texlive/texmf-dist/tex/generic/oberdiek/hobsub-hyperref.sty
Package: hobsub-hyperref 2012/05/28 v1.13 Bundle oberdiek, subset hyperref (HO)
(/usr/share/texlive/texmf-dist/tex/generic/oberdiek/hobsub-generic.sty
Package: hobsub-generic 2012/05/28 v1.13 Bundle oberdiek, subset generic (HO)
Package: hobsub 2012/05/28 v1.13 Construct package bundles (HO)
Package hobsub Info: Skipping package `infwarerr' (already loaded).
Package hobsub Info: Skipping package `ltxcmds' (already loaded).
Package: ifluatex 2010/03/01 v1.3 Provides the ifluatex switch (HO)
Package ifluatex Info: LuaTeX not detected.
Package: ifvtex 2010/03/01 v1.5 Detect VTeX and its facilities (HO)
Package ifvtex Info: VTeX not detected.
Package: intcalc 2007/09/27 v1.1 Expandable calculations with integers (HO)
Package: ifpdf 2011/01/30 v2.3 Provides the ifpdf switch (HO)
Package ifpdf Info: pdfTeX in PDF mode is detected.
Package: etexcmds 2011/02/16 v1.5 Avoid name clashes with e-TeX commands (HO)
Package etexcmds Info: Could not find \expanded.
(etexcmds) That can mean that you are not using pdfTeX 1.50 or
(etexcmds) that some package has redefined \expanded.
(etexcmds) In the latter case, load this package earlier.
Package: kvsetkeys 2012/04/25 v1.16 Key value parser (HO)
Package: kvdefinekeys 2011/04/07 v1.3 Define keys (HO)
Package: pdftexcmds 2011/11/29 v0.20 Utility functions of pdfTeX for LuaTeX (HO
)
Package pdftexcmds Info: LuaTeX not detected.
Package pdftexcmds Info: \pdf@primitive is available.
Package pdftexcmds Info: \pdf@ifprimitive is available.
Package pdftexcmds Info: \pdfdraftmode found.
Package: pdfescape 2011/11/25 v1.13 Implements pdfTeX's escape features (HO)
Package: bigintcalc 2012/04/08 v1.3 Expandable calculations on big integers (HO
)
Package: bitset 2011/01/30 v1.1 Handle bit-vector datatype (HO)
Package: uniquecounter 2011/01/30 v1.2 Provide unlimited unique counter (HO)
)
Package hobsub Info: Skipping package `hobsub' (already loaded).
Package: letltxmacro 2010/09/02 v1.4 Let assignment for LaTeX macros (HO)
Package: hopatch 2012/05/28 v1.2 Wrapper for package hooks (HO)
Package: xcolor-patch 2011/01/30 xcolor patch
Package: atveryend 2011/06/30 v1.8 Hooks at the very end of document (HO)
Package atveryend Info: \enddocument detected (standard20110627).
Package: atbegshi 2011/10/05 v1.16 At begin shipout hook (HO)
Package: refcount 2011/10/16 v3.4 Data extraction from label references (HO)
Package: hycolor 2011/01/30 v1.7 Color options for hyperref/bookmark (HO)
)
(/usr/share/texlive/texmf-dist/tex/generic/ifxetex/ifxetex.sty
Package: ifxetex 2010/09/12 v0.6 Provides ifxetex conditional
)
(/usr/share/texlive/texmf-dist/tex/latex/oberdiek/kvoptions.sty
Package: kvoptions 2011/06/30 v3.11 Key value format for package options (HO)
)
\@linkdim=\dimen105
\Hy@linkcounter=\count88
\Hy@pagecounter=\count89
(/usr/share/texlive/texmf-dist/tex/latex/hyperref/pd1enc.def
File: pd1enc.def 2012/05/13 v6.82q Hyperref: PDFDocEncoding definition (HO)
)
\Hy@SavedSpaceFactor=\count90
(/usr/share/texlive/texmf-dist/tex/latex/latexconfig/hyperref.cfg
File: hyperref.cfg 2002/06/06 v1.2 hyperref configuration of TeXLive
)
Package hyperref Info: Hyper figures OFF on input line 4062.
Package hyperref Info: Link nesting OFF on input line 4067.
Package hyperref Info: Hyper index ON on input line 4070.
Package hyperref Info: Plain pages OFF on input line 4077.
Package hyperref Info: Backreferencing OFF on input line 4082.
Package hyperref Info: Implicit mode ON; LaTeX internals redefined.
Package hyperref Info: Bookmarks ON on input line 4300.
\c@Hy@tempcnt=\count91
(/usr/share/texlive/texmf-dist/tex/latex/url/url.sty
\Urlmuskip=\muskip10
Package: url 2006/04/12 ver 3.3 Verb mode for urls, etc.
)
LaTeX Info: Redefining \url on input line 4653.
\Fld@menulength=\count92
\Field@Width=\dimen106
\Fld@charsize=\dimen107
Package hyperref Info: Hyper figures OFF on input line 5773.
Package hyperref Info: Link nesting OFF on input line 5778.
Package hyperref Info: Hyper index ON on input line 5781.
Package hyperref Info: backreferencing OFF on input line 5788.
Package hyperref Info: Link coloring OFF on input line 5793.
Package hyperref Info: Link coloring with OCG OFF on input line 5798.
Package hyperref Info: PDF/A mode OFF on input line 5803.
LaTeX Info: Redefining \ref on input line 5843.
LaTeX Info: Redefining \pageref on input line 5847.
\Hy@abspage=\count93
\c@Item=\count94
\c@Hfootnote=\count95
)
Package hyperref Message: Driver (autodetected): hpdftex.
(/usr/share/texlive/texmf-dist/tex/latex/hyperref/hpdftex.def
File: hpdftex.def 2012/05/13 v6.82q Hyperref driver for pdfTeX
\Fld@listcount=\count96
\c@bookmark@seq@number=\count97
(/usr/share/texlive/texmf-dist/tex/latex/oberdiek/rerunfilecheck.sty
Package: rerunfilecheck 2011/04/15 v1.7 Rerun checks for auxiliary files (HO)
Package uniquecounter Info: New unique counter `rerunfilecheck' on input line 2
82.
)
\Hy@SectionHShift=\skip43
)
(/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsmath.sty
Package: amsmath 2000/07/18 v2.13 AMS math features
\@mathmargin=\skip44
For additional information on amsmath, use the `?' option.
(/usr/share/texlive/texmf-dist/tex/latex/amsmath/amstext.sty
Package: amstext 2000/06/29 v2.01
(/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsgen.sty
File: amsgen.sty 1999/11/30 v2.0
\@emptytoks=\toks16
\ex@=\dimen108
))
(/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsbsy.sty
Package: amsbsy 1999/11/29 v1.2d
\pmbraise@=\dimen109
)
(/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsopn.sty
Package: amsopn 1999/12/14 v2.01 operator names
)
\inf@bad=\count98
LaTeX Info: Redefining \frac on input line 211.
\uproot@=\count99
\leftroot@=\count100
LaTeX Info: Redefining \overline on input line 307.
\classnum@=\count101
\DOTSCASE@=\count102
LaTeX Info: Redefining \ldots on input line 379.
LaTeX Info: Redefining \dots on input line 382.
LaTeX Info: Redefining \cdots on input line 467.
\Mathstrutbox@=\box26
\strutbox@=\box27
\big@size=\dimen110
LaTeX Font Info: Redeclaring font encoding OML on input line 567.
LaTeX Font Info: Redeclaring font encoding OMS on input line 568.
\macc@depth=\count103
\c@MaxMatrixCols=\count104
\dotsspace@=\muskip11
\c@parentequation=\count105
\dspbrk@lvl=\count106
\tag@help=\toks17
\row@=\count107
\column@=\count108
\maxfields@=\count109
\andhelp@=\toks18
\eqnshift@=\dimen111
\alignsep@=\dimen112
\tagshift@=\dimen113
\tagwidth@=\dimen114
\totwidth@=\dimen115
\lineht@=\dimen116
\@envbody=\toks19
\multlinegap=\skip45
\multlinetaggap=\skip46
\mathdisplay@stack=\toks20
LaTeX Info: Redefining \[ on input line 2666.
LaTeX Info: Redefining \] on input line 2667.
)
(./plumed_quick_ref.aux)
\openout1 = `plumed_quick_ref.aux'.
LaTeX Font Info: Checking defaults for OML/cmm/m/it on input line 15.
LaTeX Font Info: ... okay on input line 15.
LaTeX Font Info: Checking defaults for T1/cmr/m/n on input line 15.
LaTeX Font Info: ... okay on input line 15.
LaTeX Font Info: Checking defaults for OT1/cmr/m/n on input line 15.
LaTeX Font Info: ... okay on input line 15.
LaTeX Font Info: Checking defaults for OMS/cmsy/m/n on input line 15.
LaTeX Font Info: ... okay on input line 15.
LaTeX Font Info: Checking defaults for OMX/cmex/m/n on input line 15.
LaTeX Font Info: ... okay on input line 15.
LaTeX Font Info: Checking defaults for U/cmr/m/n on input line 15.
LaTeX Font Info: ... okay on input line 15.
LaTeX Font Info: Checking defaults for PD1/pdf/m/n on input line 15.
LaTeX Font Info: ... okay on input line 15.
(/usr/share/texlive/texmf-dist/tex/context/base/supp-pdf.mkii
[Loading MPS to PDF converter (version 2006.09.02).]
\scratchcounter=\count110
\scratchdimen=\dimen117
\scratchbox=\box28
\nofMPsegments=\count111
\nofMParguments=\count112
\everyMPshowfont=\toks21
\MPscratchCnt=\count113
\MPscratchDim=\dimen118
\MPnumerator=\count114
\makeMPintoPDFobject=\count115
\everyMPtoPDFconversion=\toks22
) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/epstopdf-base.sty
Package: epstopdf-base 2010/02/09 v2.5 Base part for package epstopdf
(/usr/share/texlive/texmf-dist/tex/latex/oberdiek/grfext.sty
Package: grfext 2010/08/19 v1.1 Manage graphics extensions (HO)
)
Package grfext Info: Graphics extension search list:
(grfext) [.png,.pdf,.jpg,.mps,.jpeg,.jbig2,.jb2,.PNG,.PDF,.JPG,.JPE
G,.JBIG2,.JB2,.eps]
(grfext) \AppendGraphicsExtensions on input line 452.
(/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg
File: epstopdf-sys.cfg 2010/07/13 v1.3 Configuration of (r)epstopdf for TeX Liv
e
))
\AtBeginShipoutBox=\box29
Package hyperref Info: Link coloring OFF on input line 15.
(/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty
Package: nameref 2010/04/30 v2.40 Cross-referencing by name of section
(/usr/share/texlive/texmf-dist/tex/generic/oberdiek/gettitlestring.sty
Package: gettitlestring 2010/12/03 v1.4 Cleanup title references (HO)
)
\c@section@level=\count116
)
LaTeX Info: Redefining \ref on input line 15.
LaTeX Info: Redefining \pageref on input line 15.
LaTeX Info: Redefining \nameref on input line 15.
(./plumed_quick_ref.out) (./plumed_quick_ref.out)
\@outlinefile=\write3
\openout3 = `plumed_quick_ref.out'.
LaTeX Font Info: Try loading font information for U+msa on input line 22.
(/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsa.fd
File: umsa.fd 2009/06/22 v3.00 AMS symbols A
)
LaTeX Font Info: Try loading font information for U+msb on input line 22.
(/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsb.fd
File: umsb.fd 2009/06/22 v3.00 AMS symbols B
)
(./plumed_quick_ref.toc)
\tf@toc=\write4
\openout4 = `plumed_quick_ref.toc'.
[1
{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}]
Underfull \hbox (badness 10000) in paragraph at lines 39--40
[]
LaTeX Font Info: Font shape `OT1/cmtt/bx/n' in size <12> not available
(Font) Font shape `OT1/cmtt/m/n' tried instead on input line 41.
LaTeX Font Info: Try loading font information for OMS+cmr on input line 44.
(/usr/share/texlive/texmf-dist/tex/latex/base/omscmr.fd
File: omscmr.fd 1999/05/25 v2.5h Standard LaTeX font definitions
)
LaTeX Font Info: Font shape `OMS/cmr/m/n' in size <12> not available
(Font) Font shape `OMS/cmsy/m/n' tried instead on input line 44.
[2] [3]
Underfull \hbox (badness 10000) in paragraph at lines 107--108
[]
LaTeX Font Info: Font shape `OT1/cmtt/bx/n' in size <14.4> not available
(Font) Font shape `OT1/cmtt/m/n' tried instead on input line 122.
[4]
Overfull \hbox (6.91164pt too wide) in paragraph at lines 149--150
\OT1/cmr/m/n/12 To run the meta-dy-nam-ics cal-cu-la-tions, you will need to pr
e-pare the in-put file \OT1/cmtt/m/n/12 plumed.dat
[]
Overfull \hbox (52.98253pt too wide) in paragraph at lines 204--204
[]\OT1/cmtt/m/n/12 sum_hills.x -file HILLS -out fes.dat -ndim 3 -ndw 1 2 -kt 0.
6 -ngrid 100 100 100[]
[]
[5]
Overfull \hbox (9.7575pt too wide) in paragraph at lines 204--204
[]\OT1/cmtt/m/n/12 [-cutoff_s 6.25 ] (the hills are cutoff at 6.25 standard de
viations from[]
[]
Overfull \hbox (28.28252pt too wide) in paragraph at lines 204--204
[]\OT1/cmtt/m/n/12 [-2pi x ] ([0;2pi] periodicity on the x CV, if -fix
is not used 2pi[]
[]
Overfull \hbox (34.45752pt too wide) in paragraph at lines 204--204
[]\OT1/cmtt/m/n/12 [-pi x ] ([-pi;pi] periodicity on the x CV, if -fi
x is not used 2pi[]
[]
Overfull \hbox (59.15753pt too wide) in paragraph at lines 204--204
[]\OT1/cmtt/m/n/12 [-bias <biasfact>] (writing output the bias for a well tempe
red metadynamics run)[]
[]
<./pic/sn2_reaction.pdf, id=131, 844.15375pt x 404.712pt>
File: ./pic/sn2_reaction.pdf Graphic file (type pdf)
<use ./pic/sn2_reaction.pdf>
Package pdftex.def Info: ./pic/sn2_reaction.pdf used on input line 214.
(pdftex.def) Requested size: 441.01772pt x 211.43951pt.
[6]
Overfull \hbox (2.78009pt too wide) in paragraph at lines 234--234
[]\OT1/cmr/bx/n/14.4 Metadynamics with Born-Oppenheimer molec-u-lar dy-nam-
[]
[7 <./pic/sn2_reaction.pdf>] [8] [9]
Overfull \hbox (15.93251pt too wide) in paragraph at lines 363--363
[]\OT1/cmtt/m/n/12 1-DISTANCE: (1st SET: 1 ATOMS), (2nd SET: 1 ATOMS); PBC ON
SIGMA 0.300000[]
[]
Overfull \hbox (15.93251pt too wide) in paragraph at lines 363--363
[]\OT1/cmtt/m/n/12 2-DISTANCE: (1st SET: 1 ATOMS), (2nd SET: 1 ATOMS); PBC ON
SIGMA 0.300000[]
[]
Overfull \hbox (34.45752pt too wide) in paragraph at lines 363--363
[]\OT1/cmtt/m/n/12 |-WALL ON COLVAR 1: UPPER LIMIT = 7.000000, KAPPA = 100.0000
00, EXPONENT = 4,[]
[]
Overfull \hbox (34.45752pt too wide) in paragraph at lines 363--363
[]\OT1/cmtt/m/n/12 |-WALL ON COLVAR 1: LOWER LIMIT = 2.500000, KAPPA = 100.0000
00, EXPONENT = 4,[]
[]
Overfull \hbox (34.45752pt too wide) in paragraph at lines 363--363
[]\OT1/cmtt/m/n/12 |-WALL ON COLVAR 2: UPPER LIMIT = 7.000000, KAPPA = 100.0000
00, EXPONENT = 4,[]
[]
Overfull \hbox (34.45752pt too wide) in paragraph at lines 363--363
[]\OT1/cmtt/m/n/12 |-WALL ON COLVAR 2: LOWER LIMIT = 2.500000, KAPPA = 100.0000
00, EXPONENT = 4,[]
[]
Overfull \hbox (40.63252pt too wide) in paragraph at lines 381--381
[] \OT1/cmtt/m/n/12 0.000 3.470115309 5.828643634 0.00000000
0 0.000000000[]
[]
Overfull \hbox (40.63252pt too wide) in paragraph at lines 381--381
[] \OT1/cmtt/m/n/12 20.000 3.476912892 5.822800771 0.00000000
0 0.000000000[]
[]
Overfull \hbox (40.63252pt too wide) in paragraph at lines 381--381
[] \OT1/cmtt/m/n/12 40.000 3.483516729 5.817608411 0.00100000
0 0.000000000[]
[]
Overfull \hbox (40.63252pt too wide) in paragraph at lines 381--381
[] \OT1/cmtt/m/n/12 60.000 3.490411466 5.812574439 0.00099960
0 0.000000000[]
[]
Overfull \hbox (40.63252pt too wide) in paragraph at lines 381--381
[] \OT1/cmtt/m/n/12 80.000 3.498291622 5.807005696 0.00199817
0 0.000000000[]
[]
Overfull \hbox (40.63252pt too wide) in paragraph at lines 381--381
[] \OT1/cmtt/m/n/12 100.000 3.507739014 5.800326723 0.00199435
6 0.000000000[]
[]
[10]
Missing character: There is no in font cmr12!
<./pic/sn2cv.pdf, id=235, 356.23087pt x 210.7875pt>
File: ./pic/sn2cv.pdf Graphic file (type pdf)
<use ./pic/sn2cv.pdf>
Package pdftex.def Info: ./pic/sn2cv.pdf used on input line 387.
(pdftex.def) Requested size: 441.01772pt x 260.96532pt.
<./pic/sn2cvs.pdf, id=236, 352.71774pt x 210.7875pt>
File: ./pic/sn2cvs.pdf Graphic file (type pdf)
<use ./pic/sn2cvs.pdf>
Package pdftex.def Info: ./pic/sn2cvs.pdf used on input line 395.
(pdftex.def) Requested size: 441.01772pt x 263.577pt.
Overfull \hbox (40.63252pt too wide) in paragraph at lines 416--416
[] \OT1/cmtt/m/n/12 40.000 3.483516729 5.817608411 0.30000000
0 0.300000000[]
[]
Overfull \hbox (40.63252pt too wide) in paragraph at lines 416--416
[] \OT1/cmtt/m/n/12 80.000 3.498291622 5.807005696 0.30000000
0 0.300000000[]
[]
Overfull \hbox (40.63252pt too wide) in paragraph at lines 416--416
[] \OT1/cmtt/m/n/12 120.000 3.519061248 5.792237732 0.30000000
0 0.300000000[]
[]
Overfull \hbox (40.63252pt too wide) in paragraph at lines 416--416
[] \OT1/cmtt/m/n/12 160.000 3.547107311 5.772092610 0.30000000
0 0.300000000[]
[]
Overfull \hbox (40.63252pt too wide) in paragraph at lines 416--416
[] \OT1/cmtt/m/n/12 200.000 3.578429291 5.750272190 0.30000000
0 0.300000000[]
[]
[11 <./pic/sn2cv.pdf>]
Overfull \hbox (40.63252pt too wide) in paragraph at lines 416--416
[] \OT1/cmtt/m/n/12 240.000 3.606928115 5.732241302 0.30000000
0 0.300000000[]
[]
Overfull \hbox (13.80449pt too wide) in paragraph at lines 430--431
[]\OT1/cmr/m/n/12 In or-der to restart a meta-dy-nam-ics run, the flag \OT1/cmt
t/m/n/12 RESTART \OT1/cmr/m/n/12 must be added to \OT1/cmtt/m/n/12 plumed.dat
[]
[12 <./pic/sn2cvs.pdf>] <./pic/sn2_fes.pdf, id=253, 346.4945pt x 152.36925pt>
File: ./pic/sn2_fes.pdf Graphic file (type pdf)
<use ./pic/sn2_fes.pdf>
Package pdftex.def Info: ./pic/sn2_fes.pdf used on input line 453.
(pdftex.def) Requested size: 441.01772pt x 193.94852pt.
[13 <./pic/sn2_fes.pdf>] [14]
<./pic/hh_fes.pdf, id=276, 350.10799pt x 210.7875pt>
File: ./pic/hh_fes.pdf Graphic file (type pdf)
<use ./pic/hh_fes.pdf>
Package pdftex.def Info: ./pic/hh_fes.pdf used on input line 523.
(pdftex.def) Requested size: 441.01772pt x 265.52933pt.
[15 <./pic/hh_fes.pdf>]
Underfull \hbox (badness 10000) in paragraph at lines 541--542
[]\OT1/cmr/m/n/12 User's Guide for \OT1/cmr/m/sc/12 Quan-tum ESPRESSO\OT1/cmr/m
/n/12 : \OT1/cmtt/m/n/12 espresso/Doc/\OT1/cmr/m/n/12 ;
[]
Package atveryend Info: Empty hook `BeforeClearDocument' on input line 553.
[16]
Package atveryend Info: Empty hook `AfterLastShipout' on input line 553.
(./plumed_quick_ref.aux)
Package atveryend Info: Executing hook `AtVeryEndDocument' on input line 553.
Package atveryend Info: Executing hook `AtEndAfterFileList' on input line 553.
Package rerunfilecheck Info: File `plumed_quick_ref.out' has not changed.
(rerunfilecheck) Checksum: E7F3F0526D38DAED2177284630659586;1052.
Package atveryend Info: Empty hook `AtVeryVeryEnd' on input line 553.
)
Here is how much of TeX's memory you used:
5966 strings out of 495048
85328 string characters out of 3181554
171489 words of memory out of 3000000
9040 multiletter control sequences out of 15000+200000
14507 words of font info for 56 fonts, out of 3000000 for 9000
14 hyphenation exceptions out of 8191
29i,7n,29p,1811b,438s stack positions out of 5000i,500n,10000p,200000b,50000s
</usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmbx12.pfb></us
r/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmcsc10.pfb></usr/sha
re/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmex10.pfb></usr/share/tex
live/texmf-dist/fonts/type1/public/amsfonts/cm/cmmi12.pfb></usr/share/texlive/t
exmf-dist/fonts/type1/public/amsfonts/cm/cmmi6.pfb></usr/share/texlive/texmf-di
st/fonts/type1/public/amsfonts/cm/cmmi8.pfb></usr/share/texlive/texmf-dist/font
s/type1/public/amsfonts/cm/cmr12.pfb></usr/share/texlive/texmf-dist/fonts/type1
/public/amsfonts/cm/cmr17.pfb></usr/share/texlive/texmf-dist/fonts/type1/public
/amsfonts/cm/cmr8.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfont
s/cm/cmsy10.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/c
msy6.pfb></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsy8.pf
b></usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmti12.pfb></us
r/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmtt12.pfb>
Output written on plumed_quick_ref.pdf (16 pages, 558631 bytes).
PDF statistics:
352 PDF objects out of 1000 (max. 8388607)
239 compressed objects within 3 object streams
53 named destinations out of 1000 (max. 500000)
138 words of extra memory for PDF output out of 10000 (max. 10000000)
|