1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283 284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301 302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318
|
/////////////////////////////////////////////////////////////
// //
// Copyright (c) 2003-2014 by The University of Queensland //
// Centre for Geoscience Computing //
// http://earth.uq.edu.au/centre-geoscience-computing //
// //
// Primary Business: Brisbane, Queensland, Australia //
// Licensed under the Open Software License version 3.0 //
// http://www.apache.org/licenses/LICENSE-2.0 //
// //
/////////////////////////////////////////////////////////////
#include "mpisgbuf.h"
#include <cstdlib> // NULL
#include <string.h>
//-- AMPISGBufferRoot member functions----
/*!
Constructor for AMPISGBufferRoot
\param comm the MPI communicator
*/
AMPISGBufferRoot::AMPISGBufferRoot(MPI_Comm comm)
{
m_comm=comm;
MPI_Comm_rank(comm,&m_rank);
MPI_Comm_size(comm,&m_size);
MPI_Pack_size(1,MPI_INT,m_comm,&m_int_increment);
MPI_Pack_size(1,MPI_DOUBLE,m_comm,&m_dbl_increment);
}
void AMPISGBufferRoot::append(const Vec3 &v,int nslice)
{
append(v.X(),nslice);
append(v.Y(),nslice);
append(v.Z(),nslice);
}
Vec3 AMPISGBufferRoot::pop_vector(int nslice)
{
double x[3] ;
pop_doubles(nslice,x,3);
return Vec3(x[0],x[1],x[2]);
}
//-- CMPISGBufferRoot member functions----
/*!
Constructor for CMPISGBufferRoot
\param comm the MPI communicator
\param buffersize buffer size per slice
*/
CMPISGBufferRoot::CMPISGBufferRoot(MPI_Comm comm,int buffersize):AMPISGBufferRoot(comm)
{
m_buffersize=buffersize;
m_buffer=new char[m_buffersize*m_size];
m_dummy_buffer=new char[m_buffersize];
m_position=new int[m_size];
for(int i=0;i<m_size;i++){
m_position[i]=i*m_buffersize;
}
}
CMPISGBufferRoot::~CMPISGBufferRoot()
{
delete [] m_buffer;
delete [] m_dummy_buffer;
delete [] m_position;
}
void CMPISGBufferRoot::clear()
{
for(int i=0;i<m_size;i++){
m_position[i]=i*m_buffersize;
}
}
/*!
Get data from all other members of the communicator, using MPI_Gather
*/
void CMPISGBufferRoot::gather()
{
MPI_Gather(m_dummy_buffer,m_buffersize,MPI_PACKED,m_buffer,m_buffersize,MPI_PACKED,m_rank,m_comm);
}
/*!
Send data to all other members of the communicator, using MPI_Scatter
*/
void CMPISGBufferRoot::scatter()
{
MPI_Scatter(m_buffer,m_buffersize,MPI_PACKED,m_dummy_buffer,m_buffersize,MPI_PACKED,m_rank,m_comm);
}
/*!
Append an integer to a given slice of the buffer.
\param i the integer
\param nslice the nr. of the slice
\warning No check for overflow
*/
void CMPISGBufferRoot::append(int i,int nslice)
{
MPI_Pack(&i,1,MPI_INT,m_buffer,m_buffersize*m_size,&(m_position[nslice]),m_comm);
}
/*!
Append an double to a given slice of the buffer.
\param d the double
\param nslice the nr. of the slice
\warning No check for overflow
*/
void CMPISGBufferRoot::append(double d,int nslice)
{
MPI_Pack(&d,1,MPI_DOUBLE,m_buffer,m_buffersize*m_size,&(m_position[nslice]),m_comm);
}
/*!
Append an C string (char*) to a given slice of the buffer.
\param str the string
\param nslice the nr. of the slice
\warning No check for overflow
*/
void CMPISGBufferRoot::append(const char* str,int nslice)
{
int len=strlen(str);
MPI_Pack(&len,1,MPI_INT,m_buffer,m_buffersize*m_size,&(m_position[nslice]),m_comm);
MPI_Pack((void *)str,len,MPI_CHAR,m_buffer,m_buffersize*m_size,&(m_position[nslice]),m_comm);
}
/*!
Pops an integer from a given slice of the the buffer, i.e. it pops the last sizeof(MPI_INT) bytes of the buffer, interpreting them as an int.
\param nslice the nr. of the slice
\return the int.
\warning No check for underflow
*/
int CMPISGBufferRoot::pop_int(int nslice)
{
int res;
MPI_Unpack(m_buffer,m_buffersize*m_size,&(m_position[nslice]),&res,1,MPI_INT,m_comm);
return res;
}
/*!
Pops an double from a given slice of the the buffer.
\param nslice the nr. of the slice
\return the double.
\warning No check for underflow
*/
double CMPISGBufferRoot::pop_double(int nslice)
{
double res;
MPI_Unpack(m_buffer,m_buffersize,&(m_position[nslice]),&res,1,MPI_DOUBLE,m_comm);
return res;
}
void CMPISGBufferRoot::pop_doubles(int nslice, double *dbl, int ndb)
{
MPI_Unpack(m_buffer,m_buffersize,&(m_position[nslice]),dbl,ndb,MPI_DOUBLE,m_comm);
}
//-- AMPISGBufferLeaf member functions----
/*!
Constuctor for AMPISGBufferLeaf
\param comm the MPI communicator
\param root rank of the root process
*/
AMPISGBufferLeaf::AMPISGBufferLeaf(MPI_Comm comm, int root):AMPIBuffer(comm)
{
m_root=root;
MPI_Pack_size(1,MPI_INT,m_comm,&m_int_increment);
MPI_Pack_size(1,MPI_DOUBLE,m_comm,&m_dbl_increment);
}
//-- CMPISGBufferLeaf member functions----
/*!
Constuctor for CMPISGBufferLeaf
\param comm the MPI communicator
\param root rank of the root process
\param buffersize size of the communication buffer
*/
CMPISGBufferLeaf::CMPISGBufferLeaf(MPI_Comm comm,int root,int buffersize):AMPISGBufferLeaf(comm,root)
{
m_buffersize=buffersize;
m_buffer = new char[m_buffersize];
for (int i = 0; i < m_buffersize; i++)
{
m_buffer[i] = '\0';
}
m_position=0;
}
CMPISGBufferLeaf::~CMPISGBufferLeaf()
{
delete [] m_buffer;
}
void CMPISGBufferLeaf::clear()
{
m_position=0;
}
/*!
Send data to the root process, using MPI_Gather
*/
void CMPISGBufferLeaf::send()
{
MPI_Gather(m_buffer,m_buffersize,MPI_PACKED,NULL,0,MPI_PACKED,m_root,m_comm);
}
/*!
Receive data from root process, using MPI_Scatter
*/
void CMPISGBufferLeaf::receive()
{
MPI_Scatter(NULL,0,MPI_PACKED,m_buffer,m_buffersize,MPI_PACKED,m_root,m_comm);
}
/*!
Append an integer to the buffer.
\warning No check for overflow
*/
void CMPISGBufferLeaf::append(int i)
{
MPI_Pack(&i,1,MPI_INT,m_buffer,m_buffersize,&m_position,m_comm);
}
/*!
Append a double to the buffer.
\warning No check for overflow
*/
void CMPISGBufferLeaf::append(double d)
{
MPI_Pack(&d,1,MPI_DOUBLE,m_buffer,m_buffersize,&m_position,m_comm);
}
/*!
Append a string to the buffer. The string appended is a normal (zero-terminated) C-string, but is internally handeled by packing the length frist and then the string.
\warning No check for overflow
*/
void CMPISGBufferLeaf::append(const char* str)
{
int len=strlen(str);
MPI_Pack(&len,1,MPI_INT,m_buffer,m_buffersize,&m_position,m_comm);
MPI_Pack((void *)str,len,MPI_CHAR,m_buffer,m_buffersize,&m_position,m_comm);
}
/*!
Pops an integer from the buffer, i.e. it pops the last sizeof(MPI_INT) bytes of the buffer, interpreting them as an int.
\warning No check for underflow
\return the int.
*/
int CMPISGBufferLeaf::pop_int()
{
int res;
MPI_Unpack(m_buffer,m_buffersize,&m_position,&res,1,MPI_INT,m_comm);
return res;
}
/*!
Pops a double from the buffer.
\warning No check for underflow
\return the double.
\sa CMPIBuffer::pop_int()
*/
double CMPISGBufferLeaf::pop_double()
{
double res;
MPI_Unpack(m_buffer,m_buffersize,&m_position,&res,1,MPI_DOUBLE,m_comm);
return res;
}
void CMPISGBufferLeaf::pop_doubles(double *dbl, int ndb)
{
MPI_Unpack(m_buffer,m_buffersize,&m_position,dbl,ndb,MPI_DOUBLE,m_comm);
}
/*!
Pops a string from the buffer. The first for bytes are interpreted as int, giving the length of the string (without terminating '\0'), the rest as the characters.
\warning no consistency check, i.e. it is not checked if the length is smaller than the buffersize.
\return the double.
\sa CMPISingle::pop_int()
*/
std::string CMPISGBufferLeaf::pop_string()
{
int len;
char* res;
MPI_Unpack(m_buffer,m_buffersize,&m_position,&len,1,MPI_INT,m_comm);
res=new char[len+1]; // +1 for terminating '\0'
MPI_Unpack(m_buffer,m_buffersize,&m_position,res,len,MPI_CHAR,m_comm);
res[len]='\0';
std::string poppedString = res;
delete [] res;
return poppedString;
}
|