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/////////////////////////////////////////////////////////////
// //
// Copyright (c) 2003-2017 by The University of Queensland //
// Centre for Geoscience Computing //
// http://earth.uq.edu.au/centre-geoscience-computing //
// //
// Primary Business: Brisbane, Queensland, Australia //
// Licensed under the Open Software License version 3.0 //
// http://www.apache.org/licenses/LICENSE-2.0 //
// //
/////////////////////////////////////////////////////////////
// --- TML includes ---
#include "tml/comm/comm.h"
// --- Project includes ---
#include "InteractionFieldMaster.h"
#include "field_const.h"
#include "console.h"
//--- IO includes ---
#include <iostream>
#include <fstream>
//--- STL inculdes ---
#include <string>
#include <map>
using std::cout;
using std::endl;
using std::ofstream;
using std::string;
using std::multimap;
/*!
Constructor. Setup master and broadcast parameters to slaves
\param comm the communicator
\param fieldname the name of the field to be saved
\param igtype the type of interaction group for which the field is saved
\param igname the name of the interaction group for which the field is saved
\param filename the name of the file to be saved into or the base for the generation of the filenames if the saving format requires multiple files
\param savetype the way to save data, currently supported are DX,SUM
\param t0 the first timestep to be saved
\param tend the last timestep to be saved
\param dt the interval between timesteps to be saving
\param checked choose between "full" and "checked" fields
*/
ScalarInteractionFieldMaster::ScalarInteractionFieldMaster(TML_Comm* comm,const string& fieldname,const string& igtype,const string& igname,const string& filename,const string& savetype,int t0,int tend,int dt,bool checked)
:AFieldMaster(comm,fieldname,filename,savetype,t0,tend,dt)
{
m_comm->broadcast_cont(fieldname);
m_comm->broadcast(m_id);
m_comm->broadcast_cont(igname);
m_comm->broadcast_cont(igtype);
int is_tagged=0;
m_comm->broadcast(is_tagged);
int is_checked=checked ? 1 : 0;
m_comm->broadcast(is_checked);
}
/*!
Constructor. Setup master and broadcast parameters to slaves
\param comm the communicator
\param fieldname the name of the field to be saved
\param igtype the type of interaction group for which the field is saved
\param igname the name of the interaction group for which the field is saved
\param filename the name of the file to be saved into or the base for the generation of the filenames if the saving format requires multiple files
\param savetype the way to save data, currently supported are DX,SUM
\param t0 the first timestep to be saved
\param tend the last timestep to be saved
\param dt the interval between timesteps to be saving
\param tag the tag of the particles to be saved
\param mask the mask to be applied to the tag
\param checked choose between "full" and "checked" fields
*/
ScalarInteractionFieldMaster::ScalarInteractionFieldMaster(TML_Comm* comm,const string& fieldname,const string& igtype,const string& igname,const string& filename,const string& savetype,int t0,int tend,int dt,int tag,int mask,bool checked)
:AFieldMaster(comm,fieldname,filename,savetype,t0,tend,dt)
{
m_comm->broadcast_cont(fieldname);
m_comm->broadcast(m_id);
m_comm->broadcast_cont(igname);
m_comm->broadcast_cont(igtype);
int is_tagged=1;
m_comm->broadcast(is_tagged);
m_comm->broadcast(tag);
m_comm->broadcast(mask);
int is_checked=checked ? 1 : 0;
m_comm->broadcast(is_checked);
}
void ScalarInteractionFieldMaster::collect()
{
// send field id to slave
m_comm->broadcast(m_id);
switch(m_write_type){
case WRITE_TYPE_SUM: collectSum(); break;
case WRITE_TYPE_RAW2: collectFull2();break;
case WRITE_TYPE_RAW_WITH_ID: collectFullWithID(); break;
case WRITE_TYPE_RAW_WITH_POS_ID: collectFullWithPosID(); break;
default: collectFull();
}
// if(m_write_type==WRITE_TYPE_SUM){
// collectSum();
// } else if (m_write_type==5){
// collectFull2();
// } else if (m_write_
// } else {
// collectFull();
// }
}
/*!
collect full data set
*/
void ScalarInteractionFieldMaster::collectFull()
{
multimap<int,pair<Vec3,double> > temp_mm;
// send type of collect to slaves
int coll_type=COLL_TYPE_FULL;
m_comm->broadcast(coll_type);
// get data from slaves
m_comm->gather(temp_mm);
// collate receive data from multimap into single map
for(multimap<int,pair<Vec3,double> >::iterator iter=temp_mm.begin();
iter!=temp_mm.end();
iter++){
m_data.push_back(iter->second);
}
}
/*!
collect full data set, both particle positions
*/
void ScalarInteractionFieldMaster::collectFull2()
{
multimap<int,IVecData2> temp_mm;
// send type of collect to slaves
int coll_type=5;
m_comm->broadcast(coll_type);
// get data from slaves
m_comm->gather(temp_mm);
// collate receive data from multimap into single map
console.XDebug() << temp_mm.size() << " data sets collected\n";
int count=0;
for(multimap<int,IVecData2>::iterator iter=temp_mm.begin();
iter!=temp_mm.end();
iter++){
m_data2.push_back(iter->second);
count++;
// write debug message every 10k writes
if((count % 10000)==0){
console.XDebug() << count << " data pushed into m_data2\n";
}
}
console.XDebug() << "finished inserting " << count << " data into m_data2\n";
}
/*!
collect data and <pid1,pid2,pos> info
*/
void ScalarInteractionFieldMaster::collectFullWithID()
{
// debug output
console.XDebug() << "ScalarInteractionFieldMaster::collectFullWithID()\n";
multimap<int,DataWithID> temp_mm;
// send type of collect to slaves
int coll_type=COLL_TYPE_FULL_WITH_ID;
m_comm->broadcast(coll_type);
console.XDebug() << "after bcast coll_type\n";
// get data from slaves
m_comm->gather(temp_mm);
console.XDebug() << "after gather temp_mm \n";
// collate receive data from multimap into single map
console.XDebug() << temp_mm.size() << " data sets collected\n";
int count=0;
for(multimap<int,DataWithID>::iterator iter=temp_mm.begin();
iter!=temp_mm.end();
iter++){
m_data_with_id.push_back(iter->second);
count++;
// write debug message every 10k writes
if((count % 10000)==0){
console.XDebug() << count << " data pushed into m_data_with_id\n";
}
}
console.XDebug() << "finished inserting " << count << " data into m_data_with_id\n";
}
/*!
collect data and <pid1,pid2,pos1,pos2,ipos> info
*/
void ScalarInteractionFieldMaster::collectFullWithPosID()
{
multimap<int,DataWithPosID> temp_mm;
// debug output
console.XDebug() << "ScalarInteractionFieldMaster::collectFullWithPosID()\n";
// send type of collect to slaves
int coll_type=COLL_TYPE_FULL_WITH_POS_ID;
m_comm->broadcast(coll_type);
// get data from slaves
m_comm->gather(temp_mm);
// collate receive data from multimap into single map
console.XDebug() << temp_mm.size() << " data sets collected\n";
int count=0;
for(multimap<int,DataWithPosID>::iterator iter=temp_mm.begin();
iter!=temp_mm.end();
iter++){
m_data_with_pos_id.push_back(iter->second);
count++;
// write debug message every 10k writes
if((count % 10000)==0){
console.XDebug() << count << " data pushed into m_data_with_id\n";
}
}
console.XDebug() << "finished inserting " << count << " data into m_data_with_id\n";
}
/*!
collect sum of values only
*/
void ScalarInteractionFieldMaster::collectSum()
{
multimap<int,double> temp_mm;
// send type of collect to slaves
int coll_type=COLL_TYPE_SUM;
m_comm->broadcast(coll_type);
// get data from slaves
m_comm->gather(temp_mm);
// collate receive data from multimap into single map
for(multimap<int,double>::iterator iter=temp_mm.begin();
iter!=temp_mm.end();
iter++){
m_sum_vec.push_back(iter->second);
}
}
/*!
write data out as OpenDX compatible file
\todo desciption
*/
void ScalarInteractionFieldMaster::writeAsDX()
{
//generate filename
string fn=makeFilename();
// write header
ofstream out_file(fn.c_str());
out_file << "points = " << m_data.size() << endl;
out_file << "format = ascii" << endl;
out_file << "dependency = positions, positions" << endl;
out_file << "interleaving = field" << endl;
out_file << "field = locations, " << m_field_name << endl;
out_file << "structure = 3-vector, scalar" << endl;
out_file << "type = float, float " << endl;
out_file << "header = marker \"Start\\n\"" << endl;
out_file << endl << "end" << endl;
out_file << "Start" << endl;
// write data
for(vector<pair<Vec3,double> >::iterator iter=m_data.begin();
iter!=m_data.end();
iter++){
out_file << iter->first << " " << iter->second << endl;
}
out_file.close();
m_data.erase(m_data.begin(),m_data.end());
}
/*!
write data as pos1,pos2,value groups
*/
void ScalarInteractionFieldMaster::writeAsRAW2()
{
//generate filename
string fn=makeFilename();
// write data
ofstream out_file(fn.c_str());
// check if file is sucessfully opened
if(!out_file){
console.Error() << "can not open output file " << fn << "\n";
} else {
int count=0;
console.XDebug() << m_data2.size() << " vectors to be written\n";
for(vector<IVecData2>::iterator iter=m_data2.begin();
iter!=m_data2.end();
iter++) {
#if 0
out_file
<< (iter->first).template get<0>()
<< " "
<< (iter->first).template get<1>()
<< " "
<< (iter->first).template get<2>()
<< " "
<< (iter->first).template get<3>()
<< " "
<< (iter->first).template get<4>()
<< " "
<< iter->second
<< endl;
#else
out_file
<< (iter->first).get<0>()
<< " "
<< (iter->first).get<1>()
<< " "
<< (iter->first).get<2>()
<< " "
<< (iter->first).get<3>()
<< " "
<< (iter->first).get<4>()
<< " "
<< iter->second
<< endl;
#endif
count++;
// write debug message every 10k writes
if((count % 10000)==0){
console.XDebug() << count << " vectors written\n";
}
}
console.XDebug() << "finished writing " << count << " vectors \n";
// close file
out_file.close();
}
//clean up
m_data2.clear();
}
/*!
write data as pid1,pid2,ipos,value groups
*/
void ScalarInteractionFieldMaster::writeAsRawWithID()
{
//generate filename
string fn=makeFilename();
// write data
ofstream out_file(fn.c_str());
// check if file is sucessfully opened
if(!out_file){
console.Error() << "can not open output file " << fn << "\n";
} else {
int count=0;
console.XDebug() << m_data_with_id.size() << " vectors to be written\n";
for(vector<DataWithID>::iterator iter=m_data_with_id.begin();
iter!=m_data_with_id.end();
iter++) {
out_file
<< (iter->first).get<0>()
<< " "
<< (iter->first).get<1>()
<< " "
<< (iter->first).get<2>()
<< " "
<< iter->second
<< endl;
count++;
// write debug message every 10k writes
if((count % 10000)==0){
console.XDebug() << count << " vectors written\n";
}
}
console.XDebug() << "finished writing " << count << " vectors \n";
// close file
out_file.close();
}
//clean up
m_data_with_id.clear();
}
/*!
write data as pid1,pid2,ipos,value groups
*/
void ScalarInteractionFieldMaster::writeAsRawWithPosID()
{
//generate filename
string fn=makeFilename();
// debug output
console.XDebug() << "ScalarInteractionFieldMaster::writeAsRawWithPosID() " << fn << "\n";
// write data
ofstream out_file(fn.c_str());
// check if file is sucessfully opened
if(!out_file){
console.Error() << "can not open output file " << fn << "\n";
} else {
int count=0;
console.XDebug() << m_data_with_id.size() << " vectors to be written\n";
for(vector<DataWithPosID>::iterator iter=m_data_with_pos_id.begin();
iter!=m_data_with_pos_id.end();
iter++) {
out_file
<< (iter->first).get<0>()
<< " "
<< (iter->first).get<1>()
<< " "
<< (iter->first).get<2>()
<< " "
<< (iter->first).get<3>()
<< " "
<< (iter->first).get<4>()
<< " "
<< iter->second
<< endl;
count++;
// write debug message every 10k writes
if((count % 10000)==0){
console.XDebug() << count << " vectors written\n";
}
}
console.XDebug() << "finished writing " << count << " vectors \n";
// close file
out_file.close();
}
//clean up
m_data_with_pos_id.clear();
}
/*!
write data as pos1,value pairs
*/
void ScalarInteractionFieldMaster::writeAsRAW()
{
// make filename
string fn=makeFilename();
// open file
ofstream out_file(fn.c_str());
// write data
for(vector<pair<Vec3,double> >::iterator iter=m_data.begin();
iter!=m_data.end();
iter++){
out_file << iter->first << " " << iter->second << endl;
}
out_file.close();
// clean up
m_data.erase(m_data.begin(),m_data.end());
}
/*!
sum data and write them out into a single continuous file
*/
void ScalarInteractionFieldMaster::writeAsSUM()
{
// sum data
double sum_data=0.0;
for(vector<double>::iterator iter=m_sum_vec.begin();
iter!=m_sum_vec.end();
iter++){
sum_data+=*iter;
}
// open file for appending
ofstream out_file(m_file_name.c_str(),ios::app);
// set output precision to 10 significant digits, scientific format
out_file.setf(ios_base::scientific, ios_base::floatfield);
out_file.precision(10);
// write data
out_file << sum_data << endl;
// close file
out_file.close();
//clean up
m_sum_vec.erase(m_sum_vec.begin(),m_sum_vec.end());
}
/*!
get the maximum of the data and write it out into a single continuous file
*/
void ScalarInteractionFieldMaster::writeAsMAX()
{
// sum data
double max_data=*(m_sum_vec.begin());
for(vector<double>::iterator iter=m_sum_vec.begin();
iter!=m_sum_vec.end();
iter++){
max_data=(*iter > max_data) ? *iter : max_data;
}
// open file for appending
ofstream out_file(m_file_name.c_str(),ios::app);
// write data
out_file << max_data << endl;
// close file
out_file.close();
//clean up
m_sum_vec.erase(m_sum_vec.begin(),m_sum_vec.end());
}
/*!
write data as a raw series of values, one row of values per time step,
all timesteps into the same file
*/
void ScalarInteractionFieldMaster::writeAsRAW_SERIES()
{
cerr << "ScalarInteractionFieldMaster::writeAsRAW_SERIES not implemented" << endl;
}
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