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# Makefile August 2006 by Alexandros Stamatakis
# Makefile cleanup October 2006, Courtesy of Peter Cordes <peter@cordes.ca>
CC = mpicc
MICFLAGS = -D__MIC_NATIVE -mmic -qopt-streaming-cache-evict=0 -qopenmp -D_USE_OMP #-D_PROFILE_MPI
COMMON_FLAGS = -std=c99 -D_OPTIMIZED_FUNCTIONS -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -D_USE_ALLREDUCE $(MICFLAGS) # -Wall -Wredundant-decls -Wreturn-type -Wswitch-default -Wunused-value -Wimplicit -Wimplicit-function-declaration -Wimplicit-int -Wimport -Wunused -Wunused-function -Wunused-label -Wno-int-to-pointer-cast -Wbad-function-cast -Wmissing-declarations -Wmissing-prototypes -Wnested-externs -Wold-style-definition -Wstrict-prototypes -Wpointer-sign -Wextra -Wredundant-decls -Wunused -Wunused-function -Wunused-parameter -Wunused-value -Wunused-variable -Wformat -Wformat-nonliteral -Wparentheses -Wsequence-point -Wuninitialized -Wundef -Wbad-function-cast -Wno-unused-parameter
OPT_FLAG_1 = -O1
OPT_FLAG_2 = -O2
CFLAGS = $(COMMON_FLAGS) $(OPT_FLAG_2)
LIBRARIES = -lm -mmic -openmp
RM = rm -f
objs = axml.o optimizeModel.o trash.o searchAlgo.o topologies.o treeIO.o models.o evaluatePartialGenericSpecial.o evaluateGenericSpecial.o newviewGenericSpecial.o makenewzGenericSpecial.o bipartitionList.o restartHashTable.o byteFile.o partitionAssignment.o communication.o mic_native_dna.o mic_native_aa.o quartets.o
all : clean examl-MIC
GLOBAL_DEPS = axml.h globalVariables.h
examl-MIC : $(objs)
$(CC) -o examl-MIC $(objs) $(LIBRARIES)
models.o : models.c $(GLOBAL_DEPS)
$(CC) $(COMMON_FLAGS) $(OPT_FLAG_1) -c -o models.o models.c
partitionAssignment.o: partitionAssignment.o $(GLOBAL_DEPS)
$(CC) $(COMMON_FLAGS) $(OPT_FLAG_1) -c -o partitionAssignment.o partitionAssignment.c
bipartitionList.o : bipartitionList.c $(GLOBAL_DEPS)
evaluatePartialSpecialGeneric.o : evaluatePartialSpecialGeneric.c $(GLOBAL_DEPS)
optimizeModel.o : optimizeModel.c $(GLOBAL_DEPS)
trash.o : trash.c $(GLOBAL_DEPS)
axml.o : axml.c $(GLOBAL_DEPS)
searchAlgo.o : searchAlgo.c $(GLOBAL_DEPS)
topologies.o : topologies.c $(GLOBAL_DEPS)
treeIO.o : treeIO.c $(GLOBAL_DEPS)
evaluatePartialGenericSpecial.o : evaluatePartialGenericSpecial.c $(GLOBAL_DEPS)
evaluateGenericSpecial.o : evaluateGenericSpecial.c $(GLOBAL_DEPS)
newviewGenericSpecial.o : newviewGenericSpecial.c $(GLOBAL_DEPS)
makenewzGenericSpecial.o : makenewzGenericSpecial.c $(GLOBAL_DEPS)
restartHashTable.o : restartHashTable.c $(GLOBAL_DEPS)
byteFile.o : byteFile.c
communication.o : communication.c $(GLOBAL_DEPS)
mic_native_dna.o : mic_native_dna.c $(GLOBAL_DEPS)
mic_native_aa.o : mic_native_aa.c $(GLOBAL_DEPS)
quartets.o : quartets.c $(GLOBAL_DEPS)
clean :
$(RM) *.o examl-MIC
dev : examl-MIC
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