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#!/bin/sh
## a script to test the annotation scripts ann_*.pl
## acc_examples contains:
# P09488 -- new NCBI format
# sp|P09488 --more traditional format
# up|P09488|GSTM1_HUMAN
# SP:GSTM1_HUMAN P09488 ---ebi searches with accession
# SP:GSTM1_HUMAN -- ebi searches without accession
##
if [ ! "$1" = '' ]; then
script_file=$1
else
script_file=/usr/share/fasta3/scripts/ann_script_list
fi
if [ ! "$1" = '' ]; then
ex_file=$1
else
ex_file=/usr/share/fasta3/scripts/acc_examples
fi
while read -r script ; do
while read -r acc_type ; do
echo "${script}" "${acc_type}"
"${script}" "${acc_type}"
done < ${ex_file}
echo '***DONE***' "$script" "$(date)"
done < ${script_file}
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