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fasta3 36.3.8i.14-Nov-2020-4
  • links: PTS, VCS
  • area: main
  • in suites: forky, sid
  • size: 7,576 kB
  • sloc: ansic: 77,292; perl: 10,677; python: 2,461; sh: 428; csh: 86; sql: 55; makefile: 40

Folder: scripts

d .. (parent)
- - rw-r--r-- 5,789 README
- - rw-r--r-- 3,182 README.scripts
- - rw-r--r-- 76 acc_examples
- - rwxr-xr-x 12,539 ann_exons_all.pl
- - rwxr-xr-x 7,233 ann_exons_ens.pl
- - rwxr-xr-x 4,941 ann_exons_ncbi.pl
- - rwxr-xr-x 8,535 ann_exons_up_sql.pl
- - rwxr-xr-x 12,227 ann_exons_up_sql_www.pl
- - rwxr-xr-x 9,106 ann_exons_up_www.pl
- - rwxr-xr-x 15,933 ann_feats2ipr.pl
- - rwxr-xr-x 15,996 ann_feats2ipr_e.pl
- - rwxr-xr-x 13,524 ann_feats_up_sql.pl
- - rwxr-xr-x 12,846 ann_feats_up_www2.pl
- - rwxr-xr-x 14,551 ann_ipr_www.pl
- - rwxr-xr-x 9,521 ann_pdb_cath.pl
- - rwxr-xr-x 8,406 ann_pdb_vast.pl
- - rwxr-xr-x 24,116 ann_pfam28.pl
- - rwxr-xr-x 27,702 ann_pfam30_tmptbl.pl
- - rwxr-xr-x 27,278 ann_pfam_sql.pl
- - rwxr-xr-x 8,244 ann_pfam_sql.py
- - rwxr-xr-x 20,591 ann_pfam_www.pl
- - rwxr-xr-x 7,871 ann_pfam_www.py
- - rw-r--r-- 232 ann_script_list
- - rwxr-xr-x 23,659 ann_upfeats_pfam_www_e.pl
- - rwxr-xr-x 44,912 annot_blast_btop2.pl
- - rwxr-xr-x 25,321 annot_blast_btop3.py
- - rwxr-xr-x 27,067 annot_blast_btop4.py
- - rwxr-xr-x 3,017 blastp_annot_cmd.sh
- - rwxr-xr-x 753 blastp_cmd.sh
- - rwxr-xr-x 4,583 color_defs.pl
- - rwxr-xr-x 4,564 exp_up_ensg.pl
- - rwxr-xr-x 3,275 expand_links.pl
- - rwxr-xr-x 5,572 expand_refseq_isoforms.pl
- - rwxr-xr-x 2,576 expand_uniref50.pl
- - rwxr-xr-x 6,043 expand_up_isoforms.pl
- - rwxr-xr-x 1,590 fasta_annot_cmd.sh
- - rwxr-xr-x 1,676 get_genome_seq.py
- - rwxr-xr-x 1,669 get_protein.py
- - rwxr-xr-x 1,722 get_protein_sql.py
- - rwxr-xr-x 3,659 get_protein_sql_www.py
- - rwxr-xr-x 553 get_refseq.py
- - rwxr-xr-x 409 get_uniprot.py
- - rwxr-xr-x 1,188 get_up_prot_iso_sql.py
- - rwxr-xr-x 9,405 lav2plt.pl
- - rwxr-xr-x 15,015 lavplt_ps.pl
- - rwxr-xr-x 13,106 lavplt_svg.pl
- - rwxr-xr-x 1,909 links2sql.pl
- - rwxr-xr-x 9,771 m8CBl_to_plot2.R
- - rwxr-xr-x 11,092 m8_btop_msa.pl
- - rwxr-xr-x 18,926 m9B_btop_msa.pl
- - rwxr-xr-x 16,976 map_exon_coords.py
- - rwxr-xr-x 7,659 merge_blast_btab.pl
- - rwxr-xr-x 9,415 merge_fasta_btab.pl
- - rwxr-xr-x 19,093 plot_domain2t.cgi
- - rwxr-xr-x 5,286 relabel_domains.py
- - rwxr-xr-x 30,354 rename_exons.py
- - rwxr-xr-x 3,042 summ_domain_ident.pl
- - rwxr-xr-x 706 test_ann_scripts.sh
- - rwxr-xr-x 2,163 test_py.sh