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This software requires c++11 to build,
which is available in GCC >= 4.8 (on linux) and Clang >= 3.3 (on mac)
Dependencies:
-------------
- CMake 3.2 or above ( https://cmake.org/ )
- either...
GNU Scientific Library ( http://www.gnu.org/software/gsl/ )
or..
Boost Library ( http://www.boost.org ) (see "-DBOOST_ROOT" below)
- Zlib ( included with OS X and most Linuxes, http://www.zlib.net ) *
- C++ compiler with C++11 and openmp support
Note for macOS users: Use "libomp" to link openmp with Clang
libomp is available through brew ( https://formulae.brew.sh/formula/libomp )
Steps:
------
mkdir build
cd build
cmake .. -DCMAKE_BUILD_TYPE=Release [--install-prefix ... -DGSL_SHARED=... -DGSL_ROOT_DIR=... -DBOOST_ROOT=...]
cmake --build .
Products:
---------
- Executable fastANI built in the build directory
cmake configure options:
-----------------------------
--install-prefix </path/to/install>
Installs binaries to bin/ and libraries to lib/ within this path. The default
is /usr/local/, which will typically require sudo for make install. Must be
absolute path.
lib/.
-DGSL_ROOT_DIR=</path/to/gsl_dir>
Where to find the GNU Scientific library install if not in the default
location (/usr/local). Must be absolute path and should not include bin/ or
-DGSL_SHARED=OFF
Statically link the GNU Scientific library instead of dynamically. Be mindful
of licensure if distributing.
-DBOOST_ROOT=</path/to/boost/>
Use Boost from this location, instead of GSL. Must be absolute path and should
not include bin/ or lib/. Will be statically linked. Be mindful of licensure
if distributing.
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