File: run

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fastaq 3.17.0-9
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  • sloc: python: 3,961; makefile: 28; xml: 13; perl: 9; sh: 8
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#!/bin/sh
# autopkgtest check: Check if fastaq tool can be executed
# Author: Sascha Steinbiss <sascha@steinbiss.name>

WORKDIR=$(mktemp -d)
trap "rm -rf $WORKDIR" 0 INT QUIT ABRT PIPE TERM
cd $WORKDIR
cat <<EOF > infile.fasta
>test
CAGTCGATGCGAGCCGGCTACGA
EOF

fastaq reverse_complement infile.fasta -