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fastDNAml, version 1.2.1, March 9, 1998
Based on Joseph Felsenstein's
Nucleic acid sequence Maximum Likelihood method, version 3.3
5 Species, 114 Sites
Quick add (only local branches initially optimized) in effect
Rearrangements of partial trees may cross 1 branch.
Rearrangements of full tree may cross 1 branch.
Total weight of positions in analysis = 60
There are 25 distinct data patterns (columns)
Empirical Base Frequencies:
A 0.21812
C 0.25686
G 0.30872
T(U) 0.21630
Transition/transversion ratio = 2.000000
(Transition/transversion parameter = 1.531841)
Adding species:
Sequence1
Sequence2
Sequence3
Sequence4
Tested 3 alternative trees
Ln Likelihood = -175.49147
Sequence5
Tested 5 alternative trees
Ln Likelihood = -188.51861
Doing local rearrangements
Tested 4 alternative trees
Examined 13 trees
+------ Sequence5
+------------------------------------3
! +--------------------- Sequence4
---2
! +--------------------- Sequence2
+---------------------1
! +------------------------------------ Sequence3
!
+------------------------------------ Sequence1
Remember: this is an unrooted tree!
Ln Likelihood = -188.51861
Between And Length Approx. Confidence Limits
------- --- ------ ------- ---------- ------
2 3 0.08381 ( 0.00311, 0.17730) **
3 Sequence5 0.01801 ( zero, 0.05604) *
3 Sequence4 0.05155 ( zero, 0.11574) **
2 1 0.04339 ( zero, 0.11187) **
1 Sequence2 0.05938 ( zero, 0.13473) **
1 Sequence3 0.08823 ( 0.00817, 0.18086) **
2 Sequence1 0.07614 ( 0.00187, 0.16110) **
* = significantly positive, P < 0.05
** = significantly positive, P < 0.01
Tree also written to treefile.24388
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