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fastDNAml, version 1.2.1, March 9, 1998
Based on Joseph Felsenstein's
Nucleic acid sequence Maximum Likelihood method, version 3.3
5 Species, 114 Sites
Quick add (only local branches initially optimized) in effect
Site category Rate of change
1 0.062
2 0.125
3 0.250
4 0.500
5 1.000
6 2.000
7 4.000
8 8.000
9 16.000
A 32.000
Rearrangements of partial trees may cross 1 branch.
Rearrangements of full tree may cross 1 branch.
Total weight of positions in analysis = 60
There are 42 distinct data patterns (columns)
Empirical Base Frequencies:
A 0.21812
C 0.25686
G 0.30872
T(U) 0.21630
Transition/transversion ratio = 2.000000
(Transition/transversion parameter = 1.531841)
Adding species:
Sequence1
Sequence2
Sequence3
Sequence4
Tested 3 alternative trees
Ln Likelihood = -192.11599
Sequence5
Tested 5 alternative trees
Ln Likelihood = -207.45621
Doing local rearrangements
Tested 4 alternative trees
Ln Likelihood = -206.60058
Tested 4 alternative trees
Examined 17 trees
+ Sequence5
+----------------------------------------3
! +---------------- Sequence4
---1
! +------------------------ Sequence2
+----------------2
! +---------------------------------------- Sequence3
!
+-------------------------------- Sequence1
Remember: this is an unrooted tree!
Ln Likelihood = -206.60058
Between And Length Approx. Confidence Limits
------- --- ------ ------- ---------- ------
1 3 0.07563 ( zero, 0.16305) **
3 Sequence5 0.01329 ( zero, 0.04273)
3 Sequence4 0.04488 ( zero, 0.10050) **
1 2 0.02816 ( zero, 0.08381)
2 Sequence2 0.05576 ( zero, 0.12600) **
2 Sequence3 0.08145 ( 0.00425, 0.17027) **
1 Sequence1 0.06884 ( zero, 0.14680) **
* = significantly positive, P < 0.05
** = significantly positive, P < 0.01
Tree also written to treefile.24391
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