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fastDNAml, version 1.2.1, March 9, 1998
Based on Joseph Felsenstein's
Nucleic acid sequence Maximum Likelihood method, version 3.3
5 Species, 114 Sites
Bootstrap random number seed = 137
Quick add (only local branches initially optimized) in effect
Rearrangements of partial trees may cross 1 branch.
Rearrangements of full tree may cross 1 branch.
Total weight of positions in analysis = 114
There are 29 distinct data patterns (columns)
Empirical Base Frequencies:
A 0.15961
C 0.27385
G 0.31035
T(U) 0.25618
Transition/transversion ratio = 2.000000
(Transition/transversion parameter = 1.591924)
Adding species:
Sequence1
Sequence2
Sequence3
Sequence4
Tested 3 alternative trees
Ln Likelihood = -353.03694
Sequence5
Tested 5 alternative trees
Ln Likelihood = -388.06824
Doing local rearrangements
Tested 4 alternative trees
Ln Likelihood = -383.09705
Tested 4 alternative trees
Examined 17 trees
+---- Sequence5
+------------------3
! +------------------ Sequence4
---1
! +------------------------------------------ Sequence3
+------------------2
! +------------- Sequence2
!
+-------------------------------- Sequence1
Remember: this is an unrooted tree!
Ln Likelihood = -383.09705
Between And Length Approx. Confidence Limits
------- --- ------ ------- ---------- ------
1 3 0.06069 ( 0.00570, 0.12148) **
3 Sequence5 0.01740 ( zero, 0.04945) *
3 Sequence4 0.07628 ( 0.02364, 0.13421) **
1 2 0.06623 ( 0.00889, 0.12989) **
2 Sequence3 0.14394 ( 0.06588, 0.23426) **
2 Sequence2 0.04896 ( zero, 0.10507) **
1 Sequence1 0.11844 ( 0.04707, 0.19992) **
* = significantly positive, P < 0.05
** = significantly positive, P < 0.01
Tree also written to treefile.24361
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