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Source: fastlink
Section: science
Priority: optional
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
DM-Upload-Allowed: yes
Uploaders: Andreas Tille <tille@debian.org>,
Charles Plessy <plessy@debian.org>
Build-Depends: cdbs, debhelper (>= 8)
Standards-Version: 3.9.2
Homepage: http://www.ncbi.nlm.nih.gov/CBBResearch/Schaffer/fastlink.html
Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/fastlink/
Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/fastlink/trunk/
Package: fastlink
Architecture: any
Section: science
Depends: ${shlibs:Depends}, ${misc:Depends}
Suggests: fastlink-doc
Description: faster version of pedigree programs of Linkage
Genetic linkage analysis is a statistical technique used to map
genes and find the approximate location of disease genes. There
was a standard software package for genetic linkage called
LINKAGE. FASTLINK is a significantly modified and improved
version of the main programs of LINKAGE that runs much faster
sequentially, can run in parallel, allows the user to recover
gracefully from a computer crash, and provides abundant new
documentation. FASTLINK has been used in over 1000 published
genetic linkage studies.
.
This package contains the following programs:
ilink: GEMINI optimization procedure to find a locally
optimal value of the theta vector of recombination
fractions
linkmap: calculates location scores of one locus against a
fixed map of other loci
lodscore: compares likelihoods at locally optimal theta
mlink: calculates lod scores and risk with two of more loci
unknown: identify possible genotypes for unknowns
Package: fastlink-doc
Architecture: all
Section: doc
Depends: ${misc:Depends}
Suggests: fastlink
Description: Some papers about fastlink
Genetic linkage analysis is a statistical technique used to map
genes and find the approximate location of disease genes. There
was a standard software package for genetic linkage called
LINKAGE. FASTLINK is a significantly modified and improved
version of the main programs of LINKAGE that runs much faster
sequentially, can run in parallel, allows the user to recover
gracefully from a computer crash, and provides abundant new
documentation. FASTLINK has been used in over 1000 published
genetic linkage studies.
.
You do not really need these papers about fastlink but it is highly
recommended to study this documentation before starting with the
tools of the fastlink package.
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