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// $Id: distanceTable.cpp 1740 2007-02-26 13:53:10Z itaymay $
#include "definitions.h"
#include "distanceTable.h"
void giveDistanceTable(const distanceMethod* dis,
const sequenceContainer& sc,
VVdouble& res,
vector<string>& names,
const vector<MDOUBLE> * weights){
res.resize(sc.numberOfSeqs());
for (int z=0; z< sc.numberOfSeqs();++z) res[z].resize(sc.numberOfSeqs(),0.0);
for (int i=0; i < sc.numberOfSeqs();++i) {
for (int j=i+1; j < sc.numberOfSeqs();++j) {
res[i][j] = dis->giveDistance(sc[sc.placeToId(i)],sc[sc.placeToId(j)],weights,NULL);
//LOG(5,<<"res["<<i<<"]["<<j<<"] ="<<res[i][j]<<endl);
}
names.push_back(sc[sc.placeToId(i)].name());
}
}
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