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// $Id: indel.cpp 962 2006-11-07 15:13:34Z privmane $
#include "indel.h"
indel::indel() {}
int indel::fromChar(const char s) const{
switch (s) {
case 'x' : case'X' : return 0; break;
case '-' : case'_' : return 1; break;
default:
vector<string> err;
err.push_back(" The indel sequences contained the character: ");
err[0]+=s;
err.push_back(" Indel was not one of the following: ");
err.push_back(" -, X");
err.push_back(" _, x");
errorMsg::reportError(err);
}// end of switch
return -99; // never suppose to be here.
}// end of function
vector<int> indel::fromString(const string &str) const {
vector<int> vec;
for (int i=0;i<str.size();i++)
vec.push_back(fromChar(str[i]));
return vec;
}
string indel::fromInt(const int in_id) const{
char res = 0;
switch (in_id) {
case 0 : res = 'X' ; break;
case 1 : res = '-' ; break;
default:
vector<string> err;
err.push_back("unable to print indel_id. indel_id was not one of the following: ");
err.push_back("X, -");
err.push_back("x, _");
errorMsg::reportError(err);
}//end of switch
string vRes;
vRes.append(1,res);
return vRes;
}// end of function
// There are no relations here.
int indel::relations(const int charInSeq, const int charToCheck) const{
if (charInSeq == charToCheck)
return 1;
return 0;
}
int indel::fromChar(const string& str, const int pos) const{
return fromChar(str[pos]);
}
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