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fastml 3.11-4
  • links: PTS, VCS
  • area: main
  • in suites: forky, sid, trixie
  • size: 5,772 kB
  • sloc: cpp: 48,522; perl: 3,588; ansic: 819; makefile: 386; python: 83; sh: 55

Folder: tests

d .. (parent)
- - rw-r--r-- 949 .cvsignore
- - rw-r--r-- 7,035 Makefile
- - rw-r--r-- 2,619 bootstrap_test.cpp
- - rw-r--r-- 1,515 bootstrap_test.out.standard
- - rw-r--r-- 215 bootstrap_test.txt
- - rw-r--r-- 1,655 checkTreeLikelihoodGivenBranches.cpp
- - rw-r--r-- 192 checkTreeLikelihoodGivenBranches.out.standard
- - rw-r--r-- 1,655 computeNJtreeJCmodel.cpp
- - rw-r--r-- 216 computeNJtreeJCmodel.out.standard
- - rw-r--r-- 375 doubleRep.cpp
- - rw-r--r-- 77 doubleRep.out.standard
- - rw-r--r-- 1,256 exhaustiveSearch.cpp
- - rw-r--r-- 1,142 exhaustiveSearch.out.standard
- - rw-r--r-- 1,541 given2seqEstimateTheDistBetweenThem.cpp
- - rw-r--r-- 244 given2seqEstimateTheDistBetweenThem.out.standard
- - rw-r--r-- 1,574 given2seqEstimateTheDistBetweenThemGamma.cpp
- - rw-r--r-- 244 given2seqEstimateTheDistBetweenThemGamma.out.standard
- - rw-r--r-- 2,047 given2seqEstimateTheDistanceK2P.cpp
- - rw-r--r-- 347 given2seqEstimateTheDistanceK2P.out.standard
- - rw-r--r-- 1,647 given2seqTheDistBetweenThem-3.cpp
- - rw-r--r-- 301 given2seqTheDistBetweenThem-3.out.standard
- - rw-r--r-- 138 njTreeRes.txt
- - rw-r--r-- 4,911 nuc7.phylip.txt
- - rw-r--r-- 1,654 optimizeBranchesJC_EM.cpp
- - rw-r--r-- 414 optimizeBranchesJC_EM.out.standard
- - rw-r--r-- 1,666 optimizeBranchesJC_EM_gam_estimate_alp.cpp
- - rw-r--r-- 361 optimizeBranchesJC_EM_gam_estimate_alp.out.standard
- - rw-r--r-- 1,606 optimizeBranchesJC_EM_gamma.cpp
- - rw-r--r-- 414 optimizeBranchesJC_EM_gamma.out.standard
- - rw-r--r-- 2,113 optimize_HKY_param.cpp
- - rw-r--r-- 497 optimize_HKY_param.out.standard
- - rw-r--r-- 638 readTreeWithComments.cpp
- - rw-r--r-- 3,770 readTreeWithComments.out.standard
- - rw-r--r-- 42 s2l4_DNA.txt
- - rw-r--r-- 138 sevenTaxaTree.txt
- - rw-r--r-- 1,192 splitMap_test.cpp
- - rw-r--r-- 486 splitMap_test.out.standard
- - rw-r--r-- 1,669 split_test.cpp
- - rw-r--r-- 669 split_test.out.standard
- - rw-r--r-- 138 startTree.txt
- - rw-r--r-- 2,755 treeWithComments.tree