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// $Id: treeInference.h 962 2006-11-07 15:13:34Z privmane $
//
// version 1.01
// last modified 23 May 2005
#ifndef ___TREE_INFERENCE
#define ___TREE_INFERENCE
#include "definitions.h"
#include "tree.h"
#include "sequenceContainer.h"
#include "stochasticProcess.h"
#include "nj.h"
#include <vector>
using namespace std;
class treeInference {
public:
static tree computeNJtreeWithLikeDist(const stochasticProcess &sp, const sequenceContainer &sc,
const tree * const constraintTreePtr = NULL, const vector<MDOUBLE> * const weights = NULL);
};
#endif
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