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# this looks better in -*- Makefile -*- mode
# $Id: Makefile.generic 11979 2014-01-30 09:48:52Z haim $
DEBUGEXEC = $(EXEC:=.debug)
#TEST_EXEC_SUB =
TEST_EXEC = $(addprefix tests/,$(TEST_EXEC_SUB))
ifdef LIBNAME
ifneq ($(LIBNAME),"")
LIB = lib$(LIBNAME).a
endif
endif
DEBUGLIB = $(LIB:.a=Debug.a)
DOUBLEREPLIB = $(LIB:.a=DoubleRep.a)
all: lib $(EXEC)
CXX=g++
libDir=../../libs/phylogeny
binDir=../../bin
ifndef libEvol
libEvol=$(libDir)/libEvolTree.a
#libEvol=-lEvolTree
libEvolDebug=$(libDir)/libEvolTreeDebug.a
libEvolDoubleRep=$(libDir)/libEvolTreedoubleRep.a
endif
vpath % $(libDir)
#CPPFLAGS+= -I/usr/include/g++-v3
LDFLAGS += -L$(libDir)
#LDLIBS = -lEvolTree
#debug: LDLIBS = -lEvolTreeDebug
# LOADLIBES = $(LIB)
#LDFLAGS=
#CPPFLAGS+= -DLOG -DLOGCLS -DMEMCHK
#GENGETOPT=/cs/++/phd/ninio/gengetopt-2.11/src/gengetopt
#GENGETOPT = /opt/local/bin/gengetopt
#GENGETOPT = ~privmane/code/gengetopt
GENGETOPT = gengetopt
.SECONDARY: $(addsuffix _cmdline.c,$(EXEC)) $(addsuffix _cmdline.h,$(EXEC)) $(addsuffix .ggo,$(EXEC))
CPPFLAGS= -O3 -Wall -Wno-sign-compare -I. -I$(libDir) -DLOG
CPPFLAGSDEBUG= -g -Wall -Wno-sign-compare -I. -I$(libDir) -DLOG
LDFLAGSDEBUG := $(LDFLAGS) -g
# sources
sources= $(Libsources) $(LibCsources) $(addsuffix .cpp,$(EXEC) $(TEST_EXEC))
.PHONY: tests lib test debug %.debug DOUBLEREP doubleRep
ifdef DOUBLEREP
CPPFLAGS+= -DDOUBLEREP
CPPFLAGSDEBUG += -DDOUBLEREP
LDFLAGSDEBUG += -DDOUBLEREP
endif
test: all tests
+if [ -d tests ] ; then cd tests && make -k ; fi
debug: $(DEBUGLIB) $(DEBUGEXEC)
debug: CPPFLAGS = $(CPPFLAGSDEBUG)
#debug: LDLIBS = -lEvolTreeDebug
debug: LIB = $(DEBUGLIB)
# debug: CPPFLAGS = -g -Wall -Wno-sign-compare -I. -I$(libDir) -DLOG
# debug: all
#$(libEvol) le:
# +cd $(libDir);make -f Makefile all
#$(libEvolDebug):
# +cd $(libDir);make -f Makefile debug
lib: $(LIB)
#lib$(LIBNAME).a: lib$(LIBNAME).a($(Libsources:.cpp=.o) $(LibCsources:.c=.o))
lib$(LIBNAME).a: $(Libsources:.cpp=.o) $(LibCsources:.c=.o)
ar rv $@ $?
ranlib $@
tags: *.cpp *.h
etags --members --language=c++ $^
EVOLLIB=-lEvolTree
libEvolDebug=-lEvolTreeDebug
libEvolDoubleRep=-lEvolTreeDoubleRep
debug: EVOLLIB=$(libEvolDebug)
ifdef LIBNAME
# LocalLib = -l$(LIBNAME)
LocalLib = lib$(LIBNAME).a
endif
#$(EXEC): LDLIBS += $(EVOLLIB)
#$(EXEC) $(TEST_EXEC): $(LIB) #$(EVOLLIB)
#$(EXEC) $(TEST_EXEC): $(LIB) $(EVOLLIB)
$(EXEC) $(TEST_EXEC): $(LocalLib) $(libEvol)
$(CXX) $(LDFLAGS) $^ -o $@
$(DEBUGEXEC) $(TEST_EXEC): $(DEBUGLIB) $(libEvolDebug)
tests: $(TEST_EXEC) $(EXEC)
-include make.dep
install: $(addprefix $(binDir)/,$(EXEC))
$(binDir)/%: %
mkdir -p $(binDir)
cp $< $@
clean:
-rm -f $(LIB) $(DEBUGLIB) $(DOUBLEREPLIB) $(EXEC) $(TEST_EXEC) $(DEBUGEXEC) $(DOUBLEREPEXEC) *.o
ifneq ($(wildcard make.dep), make.dep)
make.dep: depend
endif
depend makedep: _make.dep
@mv -f _make.dep make.dep
_make.dep: $(sources)
@echo making depend
# $(SHELL) -ec '$(CC) -MM $(CPPFLAGS) $^ | sed '\''s/\($*\)\.o[ :]*/\1.o $@ : /g'\'' > $@ ; [ -s $@ ] || rm -f $@'
# @$(SHELL) -ec '$(CC) -MM $(CPPFLAGS) $^ > $@'
@$(SHELL) -ec '$(CC) -MM $(CPPFLAGS) $^ | sed "s/\(^[^.]*\)\.o/\1.o \1.debug.o/g" > $@'
_fast:
+cd fast && make -k all
fast.% _fast.%:
+cd fast && make -k $(*)
$(libEvol):
+cd $(libDir)&&make -f Makefile all
$(libEvolDebug):
+cd $(libDir)&&make -f Makefile debug
define ggo_template
ifeq ($(wildcard $(1).ggo), $(1).ggo)
$(1): $(1)_cmdline.o
endif
endef
$(foreach exec,$(EXEC),$(eval $(call ggo_template,$(exec))))
#$(EXEC): $(addsuffix _cmdline.o,$(EXEC))
define ggo_template_debug
$(1).debug: $(1)_cmdline.debug.o
endef
$(foreach exec,$(EXEC),$(eval $(call ggo_template_debug,$(exec))))
define ggo_template_doublerep
ifeq ($(wildcard $(1).ggo), $(1).ggo)
$(1).doubleRep: $(1)_cmdline.o
endif
endef
$(foreach exec,$(EXEC),$(eval $(call ggo_template_doublerep,$(exec))))
#$(addsuffix .debug,$(EXEC)): $(addsuffix _cmdline.debug.o,$(EXEC))
%.ggo: %.args $(libDir)/evolObjs.args
cat $^ > $@
# commandline (gengetopts)
%_cmdline.h %_cmdline.c: %.ggo
$(GENGETOPT) -i$< -F$(*)_cmdline
debug: CPPFLAGS = $(CPPFLAGSDEBUG)
debug: $(addsuffix .debug,$(EXEC))
#$(addsuffix .debug,$(EXEC)): $(libEvolDebug)
pl:
echo $(LIB)
%.debug: CPPFLAGS = -g -Wall -Wno-sign-compare -I. -I../.. -DLOG
%.debug: %.o
#debug: LDLIBS = -lEvolTreeDebug
debug: LIB = $(DEBUGLIB)
%.debug: CPPFLAGS = $(CPPFLAGSDEBUG)
%.debug: LDFLAGS = $(LDFLAGSDEBUG)
#%.debug: %
# @echo "made \""$(*)"\" in debug mode"
%.debug.o: %.c
$(CC) -c $(CPPFLAGSDEBUG) $(CFLAGS) $< -o $@
%.debug.o: %.cpp
$(CXX) -c $(CPPFLAGSDEBUG) $(CXXFLAGS) $< -o $@
#$(DEBUGLIB): $(Libsources:.cpp=.debug.o) $(LibCsources:.c=.debug.o)
lib$(LIBNAME)Debug.a: $(Libsources:.cpp=.debug.o) $(LibCsources:.c=.debug.o)
ar rv $@ $?
ranlib $@
DOUBLEREPEXEC = $(EXEC:=.doubleRep)
doubleRep: LOGREP=t
doubleRep: CPPFLAGS+= -DLOGREP
doubleRep: $(DOUBLEREPLIB) $(DOUBLEREPEXEC)
# echo $@
$(DOUBLEREPEXEC): $(DOUBLEREPLIB) $(libEvolDoubleRep)
%.doubleRep.o: %.c
$(CC) -c $(CPPFLAGS) $(CFLAGS) $< -o $@
%.doubleRep.o: %.cpp
$(CXX) -c $(CPPFLAGS) $(CXXFLAGS) $< -o $@
$(DOUBLEREPLIB): $(Libsources:.cpp=.doubleRep.o) $(LibCsources:.c=.doubleRep.o)
ar rv $@ $?
ranlib $@
# DO NOT DELETE
|
