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/*
Copyright (C) 2011 Tal Pupko TalP@tauex.tau.ac.il.
This program is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License
along with this program. If not, see <http://www.gnu.org/licenses/>.
*/
#include "rate4Triad.h"
#include "errorMsg.h"
#include "logFile.h"
#include "gainLossOptions.h"
using namespace std;
/********************************************************************************************
rate4Triad
*********************************************************************************************/
rate4Triad::rate4Triad(const stochasticProcess* sp, const Vdouble& exp01V, const Vdouble& exp10V):
_sp(sp), _exp01V(exp01V), _exp10V(exp10V)
{
if(!(_rateV.size()%3==0)){
errorMsg::reportError("the length of the rates vector is not 'Triaded'");
}
}
/********************************************************************************************
*********************************************************************************************/
//void rate4Triad::computePosteriorExpectationOfChangePerTriad(){
// LOGnOUT(4,<<"Starting calculePosteriorExpectationOfChange for Triad..."<<endl);
//
// ofstream posteriorExpectationStreamTriad(gainLossOptions::_outFilePosteriorExpectationOfChangeTriad.c_str());
// posteriorExpectationStreamTriad<<"POS"<<"\t"<<"000-001"<<"\t"<<"000-010"<<endl;
//
//
// // printOut the final results
// for (int pos = 0; pos <_sc.seqLen(); pos+=3){
// posteriorExpectationStreamTriad<<pos+1<<"\t"<<expV01[pos]<<"\t"<<expV10[pos]<<endl;
// }
//}
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