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#include "indelCoderUtils.h"
#include "indelCoder.h"
void printICHelp(){
cout <<"+-------------------------------------------+"<<endl;
cout <<"*** The indelCoder project. "<<endl;
cout <<"use a parameter file with these options: "<<endl;
cout <<"+-------------------------------------------+"<<endl;
cout <<"_seqFile "<<endl;
cout <<"|------------------------------------------|"<<endl;
cout <<"_logFile "<<endl;
cout <<"_logValue "<<endl;
//cout <<"_outDir "<<endl;
cout <<"...(a partial list) "<<endl;
cout <<"+------------------------------------------+"<<endl;
}
void printICProgramInfo(){
LOGnOUT(3,<<"+=================================================================+"<<endl);
LOGnOUT(3,<<"+ The indelCoder project: "<<endl);
LOGnOUT(3,<<"+ Transforming a multiple sequence alignment (MSA) "<<endl);
LOGnOUT(3,<<"+ of amino acids into 0/1 characters "<<endl);
LOGnOUT(3,<<"+ Implementation of Indel Coding scheme SIC (Simmons et al. 2002) "<<endl);
LOGnOUT(3,<<"+ "<<PROG_INFO<<" "<<endl);
LOGnOUT(3,<<"+ Ofir Cohen - ofircohe@tau.ac.il "<<endl);
LOGnOUT(3,<<"+ Tal Pupko - talp@post.tau.ac.il "<<endl);
LOGnOUT(3,<<"+ Dorothee Huchon - huchondp@post.tau.ac.il "<<endl);
LOGnOUT(3,<<"+=================================================================+"<<endl);
}
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