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Author: Andreas Tille <tille@debian.org>
Emmanuel Bourg <ebourg@apache.org>
Last-Update: Fri Dec 4 19:18:21 2015 +0100
Description: Use Debian packaged JARs
--- a/build.xml
+++ b/build.xml
@@ -11,9 +11,10 @@
<property name="source" value="1.5"/>
<path id="FastQC.classpath">
<pathelement location="bin"/>
- <pathelement location="jbzip2-0.9.jar"/>
- <pathelement location="sam-1.103.jar"/>
- <pathelement location="cisd-jhdf5.jar"/>
+ <pathelement location="/usr/share/java/jbzip2.jar"/>
+ <pathelement location="/usr/share/java/htsjdk.jar"/>
+ <pathelement location="/usr/share/java/sis-jhdf5.jar"/>
+ <pathelement location="/usr/share/java/commons-math3.jar"/>
</path>
<target name="init">
<mkdir dir="bin"/>
@@ -34,6 +35,7 @@
<echo message="${ant.project.name}: ${ant.file}"/>
<javac debug="true" debuglevel="${debuglevel}" destdir="bin" includeantruntime="false" source="${source}" target="${target}">
<src path="."/>
+ <exclude name=".pc/**"/>
<classpath refid="FastQC.classpath"/>
</javac>
</target>
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