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import unittest
from pathlib import Path
from unittest import TestCase
import pytest
from finalcif.tools.misc import to_int, to_float, this_or_quest, flatten, strip_finalcif_of_name, next_path, \
get_error_from_value, grouper, distance, sha512_checksum_of_file, isnumeric, \
is_database_number, _angstrom_to_x
class TestMisc(unittest.TestCase):
def test_toint(self):
self.assertEqual(1, to_int('1'))
self.assertEqual(1, to_int('1(4)'))
self.assertEqual(1, to_int('1.124(4)'))
self.assertEqual(3, to_int('3.0'))
self.assertEqual([2, 3], to_int(['1', '2', '3']))
self.assertEqual([2, 3], to_int([1, 2, 3]))
def test_tofloat(self):
self.assertEqual(1.0, to_float('1'))
self.assertEqual(1.0, to_float('1(4)'))
self.assertEqual(1.124, to_float('1.124(4)'))
self.assertEqual(3.0, to_float('3.0'))
self.assertEqual([2.123, 3.0], to_float(['1', '2.123', '3']))
self.assertEqual([2.0, 3.0], to_float([1, 2, 3]))
def test_this_or_quest_integer(self):
self.assertEqual(12, this_or_quest(12))
def test_this_or_quest_None(self):
self.assertEqual('?', this_or_quest(None))
def test_this_or_quest_zero(self):
self.assertEqual(0, this_or_quest(0))
def test_this_or_quest_stringzero(self):
self.assertEqual('0', this_or_quest('0'))
def test_this_or_quest_emptystring(self):
self.assertEqual('?', this_or_quest(''))
def test_this_or_quest_zeropzero(self):
self.assertEqual(0.0, this_or_quest(0.0))
def test_flatten(self):
tofl = flatten([['wer', 234, 'brdt5'], ['dfg'], [[21, 34, 5, [1, 2, 3]], ['fhg', 4]]])
fl = ['wer', 234, 'brdt5', 'dfg', 21, 34, 5, 1, 2, 3, 'fhg', 4]
self.assertEqual(fl, tofl)
self.assertEqual(fl, tofl)
def test_strip_finalcif(self):
stripped = strip_finalcif_of_name(Path('406-0308-finalcif.cif').stem)
self.assertEqual('406-0308', stripped)
self.assertEqual('foobar', strip_finalcif_of_name('foobar'))
def test_strip_finalcif_till_end(self):
self.assertEqual('cu_BruecknerJK_153F40_0m', strip_finalcif_of_name('cu_BruecknerJK_153F40_0m-finalcif'))
self.assertEqual('cu_BruecknerJK_153F40_0m-finalcif_changes',
strip_finalcif_of_name('cu_BruecknerJK_153F40_0m-finalcif_changes'))
self.assertEqual('cu_BruecknerJK_153F40_0m',
strip_finalcif_of_name('cu_BruecknerJK_153F40_0m-finalcif_changes', till_name_ends=True))
def test_isnumeric_true(self):
self.assertEqual(True, isnumeric('1.234'))
self.assertEqual(True, isnumeric('234'))
self.assertEqual(True, isnumeric('0'))
self.assertEqual(True, isnumeric('0.234(12)'))
self.assertEqual(True, isnumeric('0.234(?)'))
def test_isnumeric_false(self):
self.assertEqual(False, isnumeric('foo'))
self.assertEqual(False, isnumeric('!0'))
def test_grouper(self):
self.assertEqual([(1, 2, 3), (4, 5, None)], list(grouper([1, 2, 3, 4, 5], n=3)))
self.assertEqual([(1, 2, 3), (4, 5, '!')], list(grouper([1, 2, 3, 4, 5], n=3, fillvalue='!')))
self.assertEqual([(1, 2), (3, 4), (5, 6)], list(grouper([1, 2, 3, 4, 5, 6], n=2)))
self.assertEqual([(1,), (2,), (3,), (4,), (5,), (6,)], list(grouper([1, 2, 3, 4, 5, 6], n=1)))
def test_distance(self):
self.assertEqual(1.7320508075688772, distance(1, 1, 1, 2, 2, 2))
self.assertEqual(1.0, distance(1, 0, 0, 2, 0, 0))
class TestSha512(unittest.TestCase):
def setUp(self) -> None:
Path('testfile').write_bytes(b'foobarbaz!1234')
def tearDown(self) -> None:
Path('testfile').unlink(missing_ok=True)
def test_sha512(self):
self.assertEqual(
'c2ef738518857a9360893420c7ead3d44b4e15d2b1b25ab870d6bdfbf4542e369e337a6546b5fa5fe0d6d0554c2c72a09fef5e997d2724256d62c03d9be1e18b',
sha512_checksum_of_file('testfile'))
class TestErrorFromValue(unittest.TestCase):
def test_get_error_from_value_with_space(self):
self.assertEqual((0.0123, 0.0023), get_error_from_value("0.0123 (23)"))
def test_get_error_from_value_below_unity(self):
self.assertEqual((0.0123, 0.0023), get_error_from_value("0.0123(23)"))
def test_get_error_from_value_noerror(self):
self.assertEqual((0.0123, 0.0), get_error_from_value('0.0123'))
def test_get_error_from_value_float(self):
self.assertEqual((250.0123, 0.0023), get_error_from_value("250.0123(23)"))
def test_get_error_from_value_onlyint(self):
self.assertEqual((123.0, 25.0), get_error_from_value("123(25)"))
def test_get_error_from_value_missing_last_bracket(self):
self.assertEqual((123.0, 25.0), get_error_from_value("123(25"))
def test_get_error_from_value_missing_error(self):
self.assertEqual((123.0, 0), get_error_from_value("123()"))
self.assertEqual((12.323, 0), get_error_from_value("12.323()"))
self.assertEqual((12.323, 0), get_error_from_value("12.323 ()"))
self.assertEqual((12.323, 0), get_error_from_value("12.323 ( )"))
class TestNextpath(unittest.TestCase):
def setUp(self) -> None:
Path('./foobar.txt').touch()
Path('./foobar-1.txt').touch()
def tearDown(self) -> None:
Path('./foobar.txt').unlink(missing_ok=True)
Path('./foobar-1.txt').unlink(missing_ok=True)
Path('./foobar-2.txt').unlink(missing_ok=True)
def test_nextpath(self):
self.assertEqual('./foobar-2.txt', next_path('./foobar-%s.txt'))
class TestDatabaseNumber(TestCase):
def test_is_database_number_str_true(self):
self.assertEqual(True, is_database_number('1234567'))
def test_is_database_number_str_false(self):
self.assertEqual(False, is_database_number('123456'))
def test_is_database_number_str_false_long(self):
self.assertEqual(False, is_database_number('12345678'))
def test_is_database_number_int_true(self):
self.assertEqual(True, is_database_number(1234567))
def test_is_database_number_int_false(self):
self.assertEqual(False, is_database_number(123456))
def test_angstrom_to_pm():
assert _angstrom_to_x('1.714(10)') == '171.4(10)'
def test_angstrom_to_p1():
assert _angstrom_to_x('1.723(9)') == '172.3(9)'
def test_angstrom_to_pm2():
assert _angstrom_to_x('1.7236(17)') == '172.36(17)'
def test_angstrom_to_pm3():
assert _angstrom_to_x('0.9800') == '98.00'
def test_angstrom_to_pm4():
assert _angstrom_to_x('98(2)') == '9800(200)'
def test_angstrom_to_pm5():
assert _angstrom_to_x('1.329(12)') == '132.9(12)'
def test_angstrom_to_pm6():
assert _angstrom_to_x('1.330(12)') == '133.0(12)'
def test_angstrom_to_pm7():
assert _angstrom_to_x('0.98(2)') == '98(2)'
def test_angstrom_to_pm8():
assert _angstrom_to_x('3003(20)') == '300300(2000)'
def test_angstrom_to_pm9():
assert _angstrom_to_x('3003(20)') == '300300(2000)'
assert _angstrom_to_x('8870(3)') == '887000(300)'
def test_angstrom_to_pm10():
assert _angstrom_to_x("0.0123 (23)") == '1.23(23)'
def test_angstrom_to_pm11():
assert _angstrom_to_x("0.0123()") == '1.23()'
def test_angstrom_to_pm12():
assert _angstrom_to_x("0.0123)") == '1.23'
def test_angstrom_to_pm13():
assert _angstrom_to_x("1.23(") == '123()'
def test_angstrom_to_pm14():
with pytest.raises(ValueError):
_angstrom_to_x("foo")
def test_angstrom_to_pm15():
with pytest.raises(TypeError):
_angstrom_to_x(None)
def test_angstrom_to_pm16():
assert _angstrom_to_x(True) == '100.0'
def test_angstrom_to_pm_squared():
assert _angstrom_to_x('0.00757(7)', factor=100 ** 2) == '75.7(7)'
def test_angstrom_to_pm_squared2():
assert _angstrom_to_x('0.008', factor=100 ** 2) == '80.0'
def test_angstrom_to_nanometers():
assert _angstrom_to_x('8870(3)', factor=0.001) == '8.870(3)'
assert _angstrom_to_x('8871(3)', factor=0.001) == '8.871(3)'
|
