1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283 284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301 302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319 320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337 338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355 356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371 372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389 390 391 392 393 394 395 396 397 398 399 400 401 402 403 404 405 406 407 408 409 410 411 412 413 414 415 416 417 418 419 420 421 422 423 424 425 426 427 428 429 430 431 432 433 434 435 436 437 438 439 440 441 442 443 444 445 446 447 448 449 450 451 452 453 454 455 456 457 458 459 460 461 462 463 464 465 466 467 468 469 470 471 472 473 474 475 476 477 478 479 480 481 482 483 484 485 486 487 488 489 490 491 492 493 494 495 496 497 498 499 500 501 502 503 504 505 506 507 508 509 510 511 512 513 514 515 516 517 518 519 520 521 522 523 524 525 526 527 528 529 530 531 532 533 534 535 536 537 538 539 540 541 542 543 544 545 546 547 548 549 550 551 552 553 554 555 556 557 558 559 560 561 562 563 564 565 566 567 568 569 570 571 572 573 574 575 576 577 578 579 580 581 582 583 584 585 586 587 588 589 590 591 592 593 594 595 596 597 598 599 600 601 602 603 604 605 606 607 608 609 610 611 612 613 614 615 616 617 618 619 620 621 622 623 624 625 626 627 628 629 630 631 632 633 634 635 636 637 638 639 640 641 642 643 644 645 646 647 648 649 650 651 652 653 654 655 656 657 658 659 660 661 662 663 664 665 666 667 668 669 670 671 672 673 674 675 676 677 678 679 680 681 682 683 684 685 686 687 688 689 690 691 692 693 694 695 696 697 698 699 700 701 702 703 704 705 706 707 708 709 710 711 712 713 714 715 716 717 718 719 720 721 722 723 724 725 726 727 728 729 730 731 732 733 734 735 736 737 738 739 740 741 742 743 744 745 746 747 748 749 750 751 752 753 754 755 756 757 758 759 760 761 762 763 764 765 766 767 768 769 770 771 772 773 774 775 776 777 778 779 780 781 782 783 784 785 786 787 788 789 790 791 792 793 794 795 796 797 798 799 800 801 802 803 804 805 806 807 808 809 810 811 812 813 814 815 816 817 818 819 820 821 822 823 824 825 826 827 828 829 830 831 832 833 834 835 836 837 838 839 840 841 842 843 844 845 846 847 848 849 850 851 852 853 854 855 856 857 858 859 860 861 862 863 864 865 866 867 868 869 870 871 872 873 874 875 876 877 878 879 880 881 882 883 884 885 886 887 888 889 890 891 892 893 894 895 896 897
|
#include "fverify.h"
typedef struct {
int nnum;
int ncmp;
int nfloat;
int *indatatyp;
double *datamax;
double *datamin;
double *tnull;
unsigned char *mask; /* for bit X column only */
int ntxt;
FitsHdu *hduptr;
FILE* out;
}UserIter;
/*************************************************************
*
* test_data
*
* Test the HDU data
*
* This routine reads every row and column of ASCII tables to
* verify that the values have the correct format.
*
* This routine checks the following types of columns in binary tables:
*
* Logical L - value must be T, F or zero
* Bit nX - if n != a multiple of 8, then check that fill bits = 0
* String A - must contain ascii text, or zero
*
* It is impossible to write an invalid value to the other types of
* columns in binary tables (B, I, J, K, E, D, C and M) so these
* columns are not read.
*
* Since it is impossible to write an invalid value in a FITS image,
* this routine does not read the image pixels.
*
*************************************************************/
void test_data(fitsfile *infits, /* input fits file */
FILE *out, /* output ascii file */
FitsHdu *hduptr /* fits hdu pointer */
)
{
iteratorCol *iter_col=0;
int ncols;
int nnum = 0;
int *numlist; /* the list of the column whose data
type is numerical(scalar and complex) */
int nfloat = 0;
int *floatlist; /* the list of the floating point columns in ASCII table */
int ncmp = 0;
int *cmplist; /* the list of the column whose data
type is numerical(scalar and complex) */
int ntxt = 0;
int *txtlist; /* the list of column whose data type is
string, logical, bit or complex */
int niter = 0; /* total columns read into the literator function */
int ndesc = 0;
int *desclist; /* the list of column which is the descriptor of
the variable length array. */
int *isVarQFormat; /* Format type for each of the ndesc variable-length
columns: 0 = type 'P', 1 = type 'Q' */
long rows_per_loop = 0, offset;
UserIter usrdata;
int datatype;
long repeat;
long totalrows;
LONGLONG length;
LONGLONG toffset;
long *maxlen;
int icol;
char *cdata;
double *ndata;
int *idata;
int *maxminflag;
int *dflag;
int nread;
char lnull = 2;
int anynul;
long nelem;
long rlength;
long bytelength;
long maxmax;
int i = 0;
int j = 0;
long jl = 0;
long k = 0;
int status = 0;
char errtmp[80];
int* perbyte;
int find_badchar = 0;
int find_badlog = 0;
LONGLONG naxis2;
int largeVarLengthWarned = 0;
int largeVarOffsetWarned = 0;
if(testcsum)
test_checksum(infits,out);
if(testfill) {
test_agap(infits,out,hduptr); /* test the bytes between the
ascii table columns. */
if(ffcdfl(infits, &status)) {
wrtferr(out,"checking data fill: ", &status, 1);
status = 0;
}
}
if(hduptr->hdutype != ASCII_TBL &&
hduptr->hdutype != BINARY_TBL ) return;
ncols = hduptr->ncols;
if(ncols <= 0) return;
ffgkyjj(infits, "NAXIS2", &naxis2, NULL, &status);
if (naxis2 > 2147483647) {
wrtout(out, "Cannot test data in tables with more than 2**31 (2147483647) rows.");
return;
}
/* separate the numerical, complex, text and
the variable length vector columns */
numlist =(int*)malloc(ncols * sizeof(int));
floatlist =(int*)malloc(ncols * sizeof(int));
cmplist =(int*)malloc(ncols * sizeof(int));
txtlist =(int*)malloc(ncols * sizeof(int));
desclist =(int*)malloc(ncols * sizeof(int));
if(hduptr->hdutype == ASCII_TBL) {
/*read every column of an ASCII table */
rows_per_loop = 0;
for (i=0; i< ncols; i++){
if(fits_get_coltype(infits, i+1, &datatype, NULL, NULL, &status)){
sprintf(errmes,"Column #%d: ",i);
wrtferr(out,errmes, &status,2);
}
if ( datatype != TSTRING ) {
numlist[nnum] = i+1;
nnum++;
if (datatype > TLONG) { /* floating point number column */
floatlist[nfloat] = i + 1;
nfloat++;
}
} else {
txtlist[ntxt] = i+1;
ntxt++;
}
}
} else if (hduptr->hdutype == BINARY_TBL) {
/* only check Bit, Logical and String columns in Binary tables */
rows_per_loop = 0;
for (i=0; i< ncols; i++){
if(fits_get_coltype(infits, i+1, &datatype, &repeat, NULL,
&status)){
sprintf(errmes,"Column #%d: ",i);
wrtferr(out,errmes, &status,2);
}
if(datatype < 0) { /* variable length column */
desclist[ndesc] = i+1;
ndesc++;
} else if(datatype == TBIT && (repeat%8) )
{ /* bit column that does not have a multiple of 8 bits */
numlist[nnum] = i+1;
nnum++;
} else if( (datatype == TLOGICAL) ||
(datatype == TSTRING ) ) {
txtlist[ntxt] = i+1;
ntxt++;
}
/* ignore all other types of columns (B I J K E D C and M ) */
}
}
/* Use Iterator to read the columns that are not variable length arrays */
/* columns from 1 to nnum are scalar numerical columns.
columns from nnum+1 to nnum+ncmp are complex columns.
columns from nnum+ncmp are text columns */
niter = nnum + ncmp + ntxt + nfloat;
if(niter)iter_col = (iteratorCol *) malloc (sizeof(iteratorCol)*niter);
for (i=0; i< nnum; i++){
fits_iter_set_by_num(&iter_col[i], infits, numlist[i], TDOUBLE,
InputCol);
}
for (i=0; i< ncmp; i++){
j = nnum + i;
fits_iter_set_by_num(&iter_col[j], infits, cmplist[i], TDBLCOMPLEX,
InputCol);
}
for (i=0; i< ntxt; i++){
j = nnum + ncmp + i;
fits_iter_set_by_num(&iter_col[j], infits, txtlist[i], 0,
InputCol);
}
for (i=0; i< nfloat; i++){
j = nnum + ncmp + ntxt + i;
fits_iter_set_by_num(&iter_col[j], infits, floatlist[i], TSTRING,
InputCol);
}
offset = 0;
usrdata.nnum = nnum;
usrdata.ncmp = ncmp;
if (nnum > 0 || ncmp > 0) {
usrdata.datamax = (double *)calloc((nnum+ncmp), sizeof(double));
usrdata.datamin = (double *)calloc((nnum+ncmp), sizeof(double));
}
usrdata.tnull = (double *)calloc(ncols, sizeof(double));
usrdata.ntxt = ntxt;
usrdata.hduptr = hduptr;
usrdata.out = out;
usrdata.nfloat = nfloat;
/* get the mask for the bit X column
for column other than the X, it always 255
for Column nX, it will be 000...111, where # of 0 is n%8,
# of 1 is 8 - n%8.
*/
if(nnum > 0) usrdata.mask =
(unsigned char *)calloc(nnum,sizeof( unsigned char));
if(nnum > 0) usrdata.indatatyp =
(int *)calloc(nnum,sizeof( int));
for (i=0; i< nnum; i++){
j = fits_iter_get_colnum(&(iter_col[i]));
if(fits_get_coltype(infits, j, &datatype, &repeat, NULL, &status)){
sprintf(errmes,"Column #%d: ",i);
wrtferr(out,errmes, &status,2);
}
usrdata.indatatyp[i] = datatype;
usrdata.mask[i] = 255;
if(datatype == TBIT) {
repeat = repeat%8;
usrdata.mask[i] = (usrdata.mask[i])>>repeat;
if(!repeat) usrdata.mask[i] = 0;
}
}
if(niter > 0) {
if(fits_iterate_data(niter, iter_col, offset,rows_per_loop, iterdata,
&usrdata,&status)){
wrtserr(out,"When Reading data, ",&status,2);
}
}
if(niter>0) free(iter_col);
free(numlist);
free(floatlist);
free(cmplist);
free(txtlist);
if(nnum > 0) free(usrdata.mask);
if(nnum > 0) free(usrdata.indatatyp);
if(nnum > 0 || ncmp > 0) {
free(usrdata.datamax);
free(usrdata.datamin);
}
free(usrdata.tnull);
if(!ndesc ) {
goto data_end;
}
/* ------------read the variable length vectors -------------------*/
usrdata.datamax = (double *)calloc(ndesc, sizeof(double));
usrdata.datamin = (double *)calloc(ndesc, sizeof(double));
usrdata.tnull = (double *)calloc(ndesc, sizeof(double));
maxminflag = (int *) calloc(ndesc , sizeof(int));
maxlen = (long *) calloc(ndesc , sizeof(long));
dflag = (int *) calloc(ndesc , sizeof(int));
perbyte = (int *) calloc(ndesc , sizeof(int));
isVarQFormat = (int *) calloc(ndesc , sizeof(int));
fits_get_num_rows(infits,&totalrows,&status);
status = 0;
/* this routine now only reads and test BIT, LOGICAL, and STRING columns */
/* There is no point in reading the other columns because the other datatypes */
/* have no possible invalid values. */
for (i = 0; i < ndesc; i++) {
icol = desclist[i];
parse_vtform(infits,out,hduptr,icol,&datatype,&maxlen[i],&isVarQFormat[i]);
dflag[i] = 4;
switch (datatype) {
case -TBIT:
dflag[i] = 1;
perbyte[i] = -8;
break;
case -TBYTE:
perbyte[i] = 1;
break;
case -TLOGICAL:
dflag[i] = 3;
perbyte[i] = 1;
break;
case -TSTRING:
dflag[i] = 0;
perbyte[i] = 1;
break;
case -TSHORT:
perbyte[i] = 2;
break;
case -TLONG:
perbyte[i] = 4;
break;
case -TFLOAT:
perbyte[i] = 4;
break;
case -TDOUBLE:
perbyte[i] = 8;
break;
case -TCOMPLEX:
dflag[i] = 2;
perbyte[i] = 8;
break;
case -TDBLCOMPLEX:
dflag[i] = 2;
perbyte[i] = 16;
break;
default:
break;
}
}
maxmax = maxlen[0];
for (i = 1; i < ndesc; i++) {
if(maxmax < maxlen[i]) maxmax = maxlen[i];
}
if(maxmax < 0) maxmax = 100;
ndata = (double *)malloc(2*maxmax*sizeof(double));
cdata = (char *)malloc((maxmax+1) *sizeof(char));
idata = (int *)malloc(maxmax *sizeof(int));
for (jl = 1; jl <= totalrows; jl++) {
for (i = 0; i < ndesc; i++) {
icol = desclist[i];
/* read and check the descriptor length and offset values */
if(fits_read_descriptll(infits, icol ,jl,&length,
&toffset, &status)){
sprintf(errtmp,"Row #%ld Col.#%d: ",jl,icol);
wrtferr(out,errtmp,&status,2);
}
if (!isVarQFormat[i])
{
if (!largeVarLengthWarned && length > 2147483647)
{
strcpy(errmes,"Var row length exceeds maximum 32-bit signed int. ");
sprintf(errtmp,"First detected for Row #%ld Column #%d",jl,icol);
strcat(errmes,errtmp);
wrtwrn(out,errmes,0);
largeVarLengthWarned = 1;
}
if (!largeVarOffsetWarned && toffset > 2147483647)
{
strcpy(errmes,"Heap offset for var length row exceeds maximum 32-bit signed int. ");
sprintf(errtmp,"First detected for Row #%ld Column #%d",jl,icol);
strcat(errmes,errtmp);
wrtwrn(out,errmes,0);
largeVarOffsetWarned = 1;
}
}
if(length > maxlen[i] && maxlen[i] > -1 ) {
sprintf(errmes, "Descriptor of Column #%d at Row %ld: ",
icol, jl);
sprintf(errtmp,"nelem(%ld) > maxlen(%ld) given by TFORM%d.",
(long) length,maxlen[i],icol);
strcat(errmes,errtmp);
wrterr(out,errmes,1);
}
if( perbyte[i] < 0)
bytelength = length/8;
else
bytelength = length*perbyte[i];
if(toffset + bytelength > hduptr->pcount ) {
sprintf(errmes, "Descriptor of Column #%d at Row %ld: ",
icol, jl);
sprintf(errtmp,
" offset of first element(%ld) + nelem(%ld)",
(long) toffset, (long) length);
strcat(errmes,errtmp);
if(perbyte[i] < 0)
sprintf(errtmp, "/8 > total heap area = %ld.",
(long) hduptr->pcount);
else
sprintf(errtmp, "*%d > total heap area = %ld.",
perbyte[i], (long) hduptr->pcount);
strcat(errmes,errtmp);
wrterr(out,errmes,2);
}
if(!length) continue; /* skip the 0 length array */
/* now check the values in BIT, LOGICAL, and String columns */
rlength = length;
if(length > maxmax) rlength = maxmax;
nread = 0;
if(dflag[i] == 1) { /* read BIT column */
nelem = rlength*dflag[i];
anynul = 0;
/* NOT YET IMPLEMENTED: This code should test that the fill bits that
pad out the last byte are all zero. Currently this test is applied
to fixed length logical arrays, but has not yet been done for
the variable length logical array case. It is probably safe to assume
that not many FITS files will contain variable length Logical columns,
to adding this test is not a high priority.
if(fits_read_col(infits, TDOUBLE, icol , jl, 1,
nelem, &nullval, ndata, &anynul, &status)) {
wrtferr(out,"",&status,2);
}
*/
}
else if(dflag[i] == 0) { /* read String column */
if(fits_read_col(infits, TSTRING, icol, jl, 1,
rlength, NULL, &cdata, &anynul, &status)) {
sprintf(errtmp,"Row #%ld Col.#%d: ",jl,icol);
wrtferr(out,errtmp,&status,2);
}
else {
j = 0;
while (cdata[j] != 0) {
if ((cdata[j] > 126) || (cdata[j] < 32) ) {
sprintf(errmes,
"String in row #%ld, and column #%d contains non-ASCII text.", jl,icol);
wrterr(out,errmes,1);
strcpy(errmes,
" (This error is reported only once; other rows may have errors).");
print_fmt(out,errmes,13);
find_badchar = 1;
break;
}
j++;
}
}
}
else if(dflag[i] == 3) { /* read Logical column */
if(fits_read_col(infits, TLOGICAL, icol, jl, 1,
rlength, &lnull, cdata, &anynul, &status)) {
sprintf(errtmp,"Row #%ld Col.#%d: ",jl,icol);
wrtferr(out,errtmp,&status,2);
}
else {
for (k = 0; k < rlength; k++) {
if (cdata[k] > 2) {
sprintf(errmes,
"Logical value in row #%ld, column #%d not equal to 'T', 'F', or 0",
jl, icol);
wrterr(out,errmes,1);
strcpy(errmes,
" (This error is reported only once; other rows may have errors).");
print_fmt(out,errmes,13);
find_badlog = 1;
break;
}
}
}
}
}
}
free(ndata);
free(cdata);
free(idata);
free(usrdata.datamax);
free(usrdata.datamin);
free(usrdata.tnull);
free(maxminflag);
free(maxlen);
free(dflag);
free(perbyte);
free(isVarQFormat);
data_end:
free(desclist);
for ( i = 0; i< ncols; i++) {
(hduptr->datamax[i])[12] = '\0';
(hduptr->datamin[i])[12] = '\0';
(hduptr->tnull[i])[11] = '\0';
}
return;
}
/***********************************************************************/
/* iterator work function */
int iterdata(long totaln,
long offset,
long firstn,
long nrows,
int narray,
iteratorCol *iter_col,
void *usrdata
)
{
static UserIter *usrpt;
static FitsHdu *hdupt;
static int nnum;
static int ntxt;
static int ncmp;
static int nfloat;
static int *flag_minmax = 0; /* define the initial min and max value */
static long *repeat;
static int *datatype;
static int find_badbit = 0;
static int find_baddot = 0;
static int find_badspace = 0;
static int find_badchar = 0;
static int find_badlog = 0;
double *data;
unsigned char *ldata;
char **cdata;
unsigned char *ucdata;
char *floatvalue;
/* bit column working space */
static unsigned char bdata;
int i;
long j,k,l;
long nelem;
int flag_cmpnull = 0;
if(firstn == 1 ) { /* first time for this table, so initialize */
usrpt = (UserIter *)usrdata;
hdupt= usrpt->hduptr;
nnum = usrpt->nnum;
ncmp = usrpt->ncmp;
ntxt = usrpt->ntxt;
nfloat = usrpt->nfloat;
flag_minmax = (int *)calloc(nnum+ncmp, sizeof(int));
repeat = (long *)calloc(narray,sizeof(long));
datatype = (int *)calloc(narray,sizeof(int));
for (i=0; i < narray; i++) {
repeat[i] = fits_iter_get_repeat(&(iter_col[i]));
datatype[i] = fits_iter_get_datatype(&(iter_col[i]));
}
find_badbit = 0;
find_baddot = 0;
find_badspace = 0;
find_badchar = 0;
find_badlog = 0;
}
/* columns from 1 to nnum are scalar numerical columns.
columns from nnum+1 to nnum+ncmp are complex columns. (not used any more)
columns from nnum+ncmp are text columns */
/* deal with the numerical column */
for (i=0; i < nnum+ncmp; i++) {
data = (double *) fits_iter_get_array(&(iter_col[i]));
j = 1;
flag_cmpnull = 0;
nelem = nrows * repeat[i];
if(i >= nnum) nelem = 2 * nrows *repeat[i];
if(nelem == 0) continue;
find_badbit = 0;
/* check for the bit jurisfication */
if(!find_badbit && usrpt->indatatyp[i] == TBIT ) {
for (k = 0; k < nrows; k++) {
j = (k+1)*repeat[i];
bdata = (unsigned char)data[j];
if( bdata & usrpt->mask[i] ) {
sprintf(errmes,
"Row #%ld, and Column #%d: X vector ", firstn+k,
fits_iter_get_colnum(&(iter_col[i])));
for (l = 1; l<= repeat[i]; l++) {
sprintf(comm, "0x%02x ", (unsigned char) data[k*repeat[i]+l]);
strcat(errmes,comm);
}
strcat(errmes,"is not left justified.");
wrterr(usrpt->out,errmes,2);
strcpy(errmes,
" (Other rows may have errors).");
print_fmt(usrpt->out,errmes,13);
find_badbit = 1;
break;
}
}
}
}
/* deal with character and logical columns */
for (i = nnum + ncmp; i < nnum + ncmp + ntxt; i++) {
if(datatype[i] == TSTRING ) { /* character */
nelem = nrows;
if(nelem == 0) continue;
cdata = (char **) fits_iter_get_array(&(iter_col[i]));
find_badchar = 0;
/* test for illegal ASCII text characters > 126 or < 32 */
if (!find_badchar) {
for (k = 0; k < nrows; k++) {
ucdata = (unsigned char *)cdata[k+1];
j = 0;
while (ucdata[j] != 0) {
if ((ucdata[j] > 126) || (ucdata[j] < 32)) {
sprintf(errmes,
"String in row #%ld, column #%d contains non-ASCII text.", firstn+k,
fits_iter_get_colnum(&(iter_col[i])));
wrterr(usrpt->out,errmes,1);
strcpy(errmes,
" (Other rows may have errors).");
print_fmt(usrpt->out,errmes,13);
find_badchar = 1;
break;
}
j++;
}
}
}
}
else { /* logical value */
nelem = nrows * repeat[i];
if(nelem == 0) continue;
ldata = (unsigned char *) fits_iter_get_array(&(iter_col[i]));
/* test for illegal logical column values */
/* The first element in the array gives the value that is used to represent nulls */
if (!find_badlog) {
for(j = 1; j <= nrows * repeat[i]; j++) {
if (ldata[j] > 2) {
sprintf(errmes,
"Logical value in row #%ld, column #%d not equal to 'T', 'F', or 0",
(firstn+j - 2)/repeat[i] +1,
fits_iter_get_colnum(&(iter_col[i])));
wrterr(usrpt->out,errmes,1);
strcpy(errmes,
" (Other rows may have similar errors).");
print_fmt(usrpt->out,errmes,13);
find_badlog = 1;
break;
}
}
}
}
}
for (i = nnum + ncmp +ntxt; i < nnum + ncmp + ntxt + nfloat; i++) {
nelem = nrows;
if(nelem == 0) continue;
cdata = (char **) fits_iter_get_array(&(iter_col[i]));
find_baddot = 0;
find_badspace = 0;
/* test for missing (implicit) decimal point in floating point numbers */
if (!find_baddot) {
for (k = 0; k < nrows; k++) {
floatvalue = (char *)cdata[k+1];
if (strcmp(cdata[0], floatvalue) && !strchr(floatvalue, '.') ) {
while (*floatvalue == ' ') /* skip leading spaces */
floatvalue++;
if (strlen(floatvalue)) { /* ignore completely blank fields */
sprintf(errmes,
"Number in row #%ld, column #%d has no decimal point:", firstn+k,
fits_iter_get_colnum(&(iter_col[i])));
wrterr(usrpt->out,errmes,1);
strcpy(errmes, floatvalue);
strcat(errmes,
" (Other rows may have similar errors).");
print_fmt(usrpt->out,errmes,13);
find_baddot = 1;
break;
}
}
}
}
if (!find_badspace) {
for (k = 0; k < nrows; k++) {
floatvalue = (char *)cdata[k+1];
if (strcmp(cdata[0], floatvalue) ) { /* not a null value? */
while (*floatvalue == ' ') /* skip leading spaces */
floatvalue++;
l = strlen(floatvalue) - 1;
while (l > 0 && floatvalue[l] == ' ') { /* remove trailing spaces */
floatvalue[l] = '\0';
l--;
}
if (strchr(floatvalue, ' ') ) {
sprintf(errmes,
"Number in row #%ld, column #%d has embedded space:", firstn+k,
fits_iter_get_colnum(&(iter_col[i])));
wrterr(usrpt->out,errmes,1);
strcpy(errmes, floatvalue);
strcat(errmes,
" (Other rows may have similar errors).");
print_fmt(usrpt->out,errmes,13);
find_badspace = 1;
break;
}
}
}
}
}
if(firstn + nrows - 1 == totaln) {
free(flag_minmax);
free(datatype);
free(repeat);
}
return 0;
}
/*************************************************************
*
* test_agap
*
* Test the bytes between the ASCII table column.
*
*
*************************************************************/
void test_agap(fitsfile *infits, /* input fits file */
FILE *out, /* output ascii file */
FitsHdu *hduptr /* fits hdu pointer */
)
{
int ncols;
LONGLONG nrows;
long irows;
LONGLONG rowlen;
unsigned char *data;
int *temp;
unsigned char *p;
LONGLONG i, j;
int k, m, t;
long firstrow = 1;
long ntodo;
long nerr = 0;
int status = 0;
char keyname[9];
char tform[FLEN_VALUE], comment[256];
int typecode, decimals;
long width, tbcol;
nerr = 0;
if(hduptr->hdutype != ASCII_TBL) return;
ncols = hduptr->ncols;
fits_get_num_rowsll(infits,&nrows,&status);
status = 0;
fits_get_rowsize(infits, &irows, &status);
status = 0;
rowlen = hduptr->naxes[0];
data = (unsigned char*)malloc(rowlen*sizeof(unsigned char)*irows);
/* Create a template row with data fields filled with 1s.
Used below - different ASCII rules apply within data columns
vs. between data columns. */
temp = (int*)malloc(rowlen * sizeof(int));
for (m = 0; m<rowlen; m++ ) temp[m]=0;
for (k = 1; k<=ncols; k++ ) {
sprintf(keyname, "TFORM%d",k);
fits_read_key_str(infits, keyname, tform, comment, &status);
if (fits_ascii_tform(tform, &typecode, &width, &decimals, &status))
wrtferr(out,"",&status,1);
sprintf(keyname, "TBCOL%d",k);
fits_read_key_lng(infits, keyname, &tbcol, comment, &status);
for (t = tbcol; t < tbcol+width; t++) temp[t-1]=1;
}
i = nrows;
while( i > 0) {
if( i > irows)
ntodo = irows;
else
ntodo = i;
p = data;
if(fits_read_tblbytes(infits,firstrow,1, rowlen*ntodo,
data, &status)){
wrtferr(out,"",&status,1);
}
for (j = 0; j<rowlen*ntodo; j++ ) {
if(!isascii(*p)) {
if(!nerr) {
#if (USE_LL_SUFFIX == 1)
sprintf(errmes,
"row %lld contains non-ASCII characters.", j/rowlen+1);
#else
sprintf(errmes,
"row %ld contains non-ASCII characters.", j/rowlen+1);
#endif
wrterr(out,errmes,1);
}
nerr++;
} else if(isascii(*p) && !isprint(*p)) {
if(temp[j%rowlen]) {
if(!nerr) {
#if (USE_LL_SUFFIX == 1)
sprintf(errmes,
"row %lld data contains non-ASCII-text characters.", j/rowlen+1);
#else
sprintf(errmes,
"row %ld data contains non-ASCII-text characters.", j/rowlen+1);
#endif
wrterr(out,errmes,1);
}
nerr++;
}
}
p++;
}
firstrow += ntodo;
i -=ntodo;
}
if(nerr) {
sprintf(errmes,
"This ASCII table contains %ld non-ASCII-text characters",nerr);
wrterr(out,errmes,1);
}
free(data);
free(temp);
return;
}
/*************************************************************
*
* test_checksum
*
* Test the checksum of the hdu
*
*
*************************************************************/
void test_checksum(fitsfile *infits, /* input fits file */
FILE *out /* output ascii file */
)
{
int status = 0;
int dataok, hduok;
if (fits_verify_chksum(infits, &dataok, &hduok, &status))
{
wrtferr(out,"verifying checksums: ",&status,2);
return;
}
if(dataok == -1)
wrtwrn(out,
"Data checksum is not consistent with the DATASUM keyword",0);
if(hduok == -1 ) {
if(dataok == 1) {
wrtwrn(out,
"Invalid CHECKSUM means header has been modified. (DATASUM is OK) ",0);
}
else {
wrtwrn(out, "HDU checksum is not in agreement with CHECKSUM.",0);
}
}
return;
}
|