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Flye Installation
=================
Availability
------------
Flye is available for Linux and MacOS platforms.
Bioconda Releases
-----------------
You can get the latest stable release through Bioconda:
conda install flye
Alternatively, you can get a release version from the github releases page
Building Requirements
---------------------
* Python 2.7 or 3.5+ (with setuptools package installed)
* C++ compiler with C++11 support (GCC 4.8+ / Clang 3.3+ / Apple Clang 5.0+)
* GNU make
* Git
* Core OS development headers (zlib, ...)
Local building (without installation)
-------------------------------------
You may use the package locally without system installation.
To get and compile the latest git version, run:
git clone https://github.com/fenderglass/Flye
cd Flye
make
Then, Flye will be available as:
python bin/flye
Building on ARM architecture
----------------------------
In case building Flye on ARM architecture fails, you might need to modify minimap2 compilation parameters:
https://github.com/fenderglass/Flye/issues/386
Installing from source
----------------------
To install the Flye package into your system, run:
git clone https://github.com/fenderglass/Flye
cd Flye
python setup.py install
Depending on your OS, you might need to add
```--user``` or ```--prefix``` options to the
install command for the local installation.
After installation, Flye could be invoked via:
flye
Optionally, run some tests to ensure that installation was successful:
python flye/tests/test_toy.py
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