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Source: flye
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Andreas Tille <tille@debian.org>,
Étienne Mollier <emollier@debian.org>
Section: science
Priority: optional
Build-Depends: debhelper-compat (= 13),
dh-sequence-python3,
python3,
python3-setuptools,
liblemon-dev,
libminimap2-dev,
samtools,
zlib1g-dev
Standards-Version: 4.7.0
Vcs-Browser: https://salsa.debian.org/med-team/flye
Vcs-Git: https://salsa.debian.org/med-team/flye.git
Homepage: https://github.com/fenderglass/Flye
Rules-Requires-Root: no
Package: flye
Architecture: any
Depends: ${shlibs:Depends},
${python3:Depends},
${misc:Depends},
python3-six,
minimap2,
samtools
Description: de novo assembler for single molecule sequencing reads using repeat graphs
Flye is a de novo assembler for single molecule sequencing reads, such
as those produced by PacBio and Oxford Nanopore Technologies. It is
designed for a wide range of datasets, from small bacterial projects to
large mammalian-scale assemblies. The package represents a complete
pipeline: it takes raw PacBio / ONT reads as input and outputs polished
contigs. Flye also has a special mode for metagenome assembly.
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