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#!/usr/bin/make -f
# -*- makefile -*-
FSLMAJORVERSION = 5.0
# enable exented globbing in the shell to be able to use more
# sophisticated stuff in dh_install files
SHELL := /bin/bash -O extglob
# get octave paths (have to build-depend on octave-headers)
include /usr/share/octave/debian/defs.make
# This has to be exported to make some magic below work.
export DH_OPTIONS
# specify all FSL projects that shall be built
PROJECTS = \
utils fslio miscmaths newimage libvis first_lib meshclass fslvtkio \
misc_tcl basisfield warpfns bint shapeModel MVdisc fslsurface libmeshutils \
avwutils basil bet2 cluster fast4 feat5 film filmbabe flirt fabber baycest \
fslvbm mcflirt melodic misc_c miscvis mm gps randomise siena slicetimer susan \
tbss fnirt fugue asl_mfree misc_scripts fdt first possum sgeutils flameo \
oxford_asl qboot topup ptx2 lesions eddy
# specify FSL extras to be built
EXTRAS = libprob libcprob cprob
# set essential config vars for FSL build process
FSLDIR=$(CURDIR)
FSLCONFDIR=$(FSLDIR)/config
# apply to FSL as 'ARCHLDFLAGS'
# 'as-needed' kills everything -- symbols of C libs get confused
# and results change -- remember cprob:gamma()
#LDFLAGS = -Wl,--no-undefined -Wl,--as-needed -L/usr/lib/fsl/lib
LDFLAGS:=$(shell dpkg-buildflags --get LDFLAGS) \
-Wl,--no-undefined -L/usr/lib/fsl/lib
# default compiler flags
# apply to FSL as 'ANSI_FLAGS'
CFLAGS:=$(shell dpkg-buildflags --get CFLAGS) \
$(shell dpkg-buildflags --get CPPFLAGS) \
-DHAVE_LIBFREETYPE -fPIC \
-I/usr/include/nifti \
-I/usr/include/gifti \
-I/usr/include/newmat \
-I$(FSLDIR)/extras/src/libprob -I$(FSLDIR)/extras/src/libcprob \
-I$(FSLDIR)/src
# where are the internal libs
FSL_LIBRARY_PATH=$(CURDIR)/lib
# install into this directory
DEB_DESTDIR=$(CURDIR)/debian/tmp
# don't compile GPU
COMPILE_GPU:=0
# define common environment setup for all make calls
# complicated LD_LIBRARY expression ensures that no
# trailing colon ends up in LD_LIBRARY_PATH
DEB_BUILD_ENV=LD_LIBRARY_PATH=$(FSL_LIBRARY_PATH)$${LD_LIBRARY_PATH:+:$${LD_LIBRARY_PATH}} \
FSLDIR="$(FSLDIR)" \
FSLDEVDIR="$(FSLDIR)" \
FSLCONFDIR="$(FSLCONFDIR)" \
DEB_DESTDIR="$(DEB_DESTDIR)" \
OPTFLAGS="$(OPTFLAGS)" \
ANSI_FLAGS="$(CFLAGS) $(CPPFLAGS)" \
DEPENDFLAGS="$(CFLAGS)" \
ARCHLDFLAGS="$(LDFLAGS)" \
COMPILE_GPU="$(COMPILE_GPU)" \
CUDA="/usr"
controlfiles:
# inject current FSL major version into all templates
for f in debian/templates/*; do \
sed -e "s/#FSLMVERSION#/$(FSLMAJORVERSION)/g" $$f \
> debian/$$(basename $$f) ; \
done
# renamed files that need to have a version-specific name
for suffix in 1 desktop dirs install links lintian-overrides manpages menu docs; do \
for prefix in 'core' 'gpu'; do \
[ -f debian/fsl-$$prefix.$$suffix ] && \
mv debian/fsl-$$prefix.$$suffix debian/fsl-$(FSLMAJORVERSION)-$$prefix.$$suffix || true ; \
done ; \
done
# and rename the meta-package files
for f in debian/meta.*; do \
target=$$(basename $$f); suffix=$${target#*.} ; \
mv $$f debian/fsl-core.$$suffix; \
done
cleancontrolfiles:
# clean sed'ed files and intermediate rubbish
for f in debian/templates/*; do\
rm -f debian/$$(basename $$f) ; \
done
rm -f debian/fsl-core.preinst
# versioned files
rm -f debian/fsl-$(FSLMAJORVERSION)-{core,gpu}.{1,desktop,dirs,install,links,lintian-overrides,manpages,menu,preinst,docs}
# build and install extra
biextra-%:
$(DEB_BUILD_ENV) $(MAKE) -C extras/src/$*
$(DEB_BUILD_ENV) $(MAKE) -C extras/src/$* install
# cleanup extra
cextra-%:
$(DEB_BUILD_ENV) $(MAKE) -C extras/src/$* distclean
# build and install sub-project
biproj-%:
$(DEB_BUILD_ENV) $(MAKE) -C src/$*
$(DEB_BUILD_ENV) $(MAKE) -C src/$* install
# cleanup sub-project
cproj-%:
$(DEB_BUILD_ENV) $(MAKE) -C src/$* distclean
# build and install all extras
biextras: $(EXTRAS:%=biextra-%)
# clean all extras
cextras: $(EXTRAS:%=cextra-%)
find extras/src -name '*.o' -delete
instdir:
# FSL does not separate build and install properly
# create temporary install dir now
if [ ! -d $(DEB_DESTDIR) ]; then mkdir -p $(DEB_DESTDIR); fi
dh_installdirs
# build and install all sub-projects
biprojs: $(PROJECTS:%=biproj-%)
# cleanup all sub-projects
cprojs: $(PROJECTS:%=cproj-%)
#Architecture
build: build-arch build-indep
build-arch: build-stamp
build-indep: build-stamp
build-stamp: instdir biextras biprojs
dh_testdir
# fix permissions
find debian/tmp/tcl/BWidget -type f -exec chmod -x {} \;
chmod 644 debian/tmp/tcl/*.{tcl,xbm,ppm,ico}
chmod -x debian/tmp/etc/flirtsch/*
# cleanup TCL stuff
rm -r debian/tmp/tcl/BWidget/BWMan/
find debian/tmp/tcl/BWidget/ -name '*.txt' -delete
# generate debhelper file to create /usr/bin symlinks and manpage links
# for all relevant binaries installed by the versioned FSL package
for f in $$(find debian/tmp/bin \! -type d \! -name Runtcl | sort); do \
bname=$$(basename $$f); \
[[ "$$bname" = *gpu* ]] && ptype="gpu" || ptype="core" ; \
echo "/usr/lib/fsl/$(FSLMAJORVERSION)/fsl_app_wrapper /usr/bin/fsl$(FSLMAJORVERSION)-$$bname" >> debian/fsl-$(FSLMAJORVERSION)-$$ptype.links ; \
echo "/usr/share/man/man1/fsl-$(FSLMAJORVERSION).1.gz /usr/share/man/man1/fsl$(FSLMAJORVERSION)-$${bname}.1.gz" >> debian/fsl-$(FSLMAJORVERSION)-$$ptype.links ; \
done
touch $@
clean: cleancontrolfiles controlfiles cextras cprojs
dh_testdir
dh_testroot
# remove leftovers
find $(CURDIR) -name '*.so' -delete
-rm src/fdt/{xfibres,fdt_matrix_ops,indexer,replacevols,probtrackx,reord_OM,sausages,probtrack_old,xfibres_pred,rearrange}
-rm src/feat5/doc/{top.html,feat.tcl}
-rm -r etc/standard lib
# clean the remaining temp dir
rm -rf include
# finally clean package
dh_clean
# fix permissions in the source
find src/ -name '*.fig' -or -name '*.gif' -exec chmod -x {} \;
-rm build-stamp
# checks that the included desktop files are ok
validate-desktop-files:
for f in $(CURDIR)/debian/desktop/*.desktop; do \
desktop-file-validate $${f} ; \
done
install: build
# make FSL logo for menu entries
convert debian/tmp/tcl/fsl-logo-tiny.ppm \
-resize x32 -crop 32x32+6+0 debian/tmp/fsl-$(FSLMAJORVERSION).xpm
# install fsl config
cp -r -t debian/tmp etc
# clean useless pieces
rm debian/tmp/etc/fslconf/fslmachtype.sh
# do not install license files
rm debian/tmp/etc/js/LICENSE.txt
# Must not depend on anything. This is to be called by
# binary-arch/binary-indep
# in another 'make' thread.
binary-common:
dh_testdir
dh_testroot
dh_install
dh_installchangelogs
dh_installman
dh_installdocs
dh_installmenu
# fixup duplicate GPU tools
rm -f debian/fsl-$(FSLMAJORVERSION)-core/usr/lib/fsl/$(FSLMAJORVERSION)/*gpu*
rm -f debian/fsl-$(FSLMAJORVERSION)-core/usr/lib/fsl/$(FSLMAJORVERSION)/*cuda*
dh_lintian
dh_link
dh_strip
dh_compress
dh_fixperms
dh_installdeb
# dh_shlibdeps needs access to the private libs
dh_shlibdeps -l $(FSL_LIBRARY_PATH)
# get the correct dependency for older octave
[ -e /usr/bin/octave-depends ] \
&& octave-depends || true
dh_gencontrol
dh_md5sums
dh_builddeb
# Build architecture independent packages using the common target.
binary-indep: install
dh_installdirs -i
$(MAKE) -f debian/rules DH_OPTIONS=-i binary-common
# Build architecture dependant packages using the common target.
binary-arch: install
dh_installdirs -a
# install the stylesheet
cp -r doc/fsl.css debian/fsl-$(FSLMAJORVERSION)-core/usr/share/fsl/$(FSLMAJORVERSION)/doc
# remove previous link to make repeated builds work
-rm debian/fsl-$(FSLMAJORVERSION)-core/usr/share/fsl/$(FSLMAJORVERSION)/etc/fslconf/{feat.tcl,fsl.sh}
# set execute permission for GUI application wrapper
chmod +x debian/fsl_app_wrapper
$(MAKE) -f debian/rules DH_OPTIONS=-a binary-common
binary: binary-arch binary-indep
.PHONY: build clean binary-indep binary-arch binary
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