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/* Copyright (C) 1999-2004 University of Oxford */
/* CCOPYRIGHT */
#include <vector>
#include <string>
#include <cstdlib>
#include <fstream>
using namespace std;
namespace Utilities {
bool string_to_T(pair<float,float> &p, const string& s)
{
string str(s), delin(",");
vector<float> vf(0);
if(str.find(":")!=string::npos)
delin = ":";
str=str+delin;
vf.clear();
while(str.size()) {
float v = atof(str.substr(0,str.find(delin)).c_str());
vf.push_back(v);
str = str.substr(str.find(delin)+1,str.length()-str.find(delin)-1);
}
bool retval(false);
if(vf.size() == 2) {
p.first = vf[0];
p.second = vf[1];
retval = true;
}
return true;
}
}
#include "options.h"
using namespace Utilities;
Option<bool> verbose(string("-V,--verbose"), false,
string("switch on diagnostic messages"),
false, no_argument);
Option<bool> debugging(string("-D"), false,
string("switch on debugging mode"),
false, no_argument);
Option<bool> help(string("-h,--help"), false,
string("display this message"),
false, no_argument);
Option<float> dof(string("-d,--dof"), 100.0,
string("number of degrees of freedom"),
true, requires_argument);
Option<string> mask(string("-m,--mask"), string("mask"),
string("brain mask volume"),
true, requires_argument);
Option<string> resid(string("-r,--res"), string("res4d"),
string("4d `residual-of-fit' image"),
true, requires_argument);
Option<string> config_file(string("-c,--config"), string(""),
string("Specify a config file to read the default settings from."),
false, requires_argument);
Option<int> segid(string("-s,--shared-seg-id"), -1,
"shared memory segment ID",
false, requires_argument);
HiddenOption<bool> noint(string("-n,--no-scientific-integrity"), false,
string("You complete putz"),
false, no_argument);
Option<string> zopt(string("--zopt"), string("Whoo!"),
string("string input"),
false, optional_argument);
Option< pair<float,float> > popt(string("-P,--popt"), std::make_pair(0.0, 0.0),
string("X,Y location"),
false, requires_argument);
FmribOption< std::vector<string> >
strseq(string("-I"), std::vector<string>(),
string("A coma seperated include path"),
false, requires_argument);
string title =
"opttst (Version 2.0)\n\n\
Copyright(c) 2000-2007, University of Oxford\n\
Author: Dave Flitney";
string examples =
"opttst --dof=<number> --mask=<filename> --res=<filename>\n\
opttst -d <number> -m <filename> -r <filename>\n\
opttst --verbose\n";
int main(int argc, char **argv) {
OptionParser options(title, examples);
try {
options.add(verbose);
options.add(debugging);
options.add(help);
options.add(config_file);
options.add(segid);
options.add(dof);
options.add(mask);
options.add(resid);
options.add(noint);
options.add(strseq);
options.add(zopt);
options.add(popt);
for(unsigned int a = options.parse_command_line(argc, argv);
a < argc; ) {
// Should be image names followed by optional image options
string imagename(argv[a]);
// Possible sub-options as follows:
Option<string> lutname(string("-l,--lut"), string("Unset"),
string("Lookup table name. One of: GreyScale; RedYellow; BlueLightblue; Red; Green; Blue, etc."),
false, requires_argument);
Option< std::pair<float,float> >
ibricon(string("-b,--bricon"), std::pair<float,float>(), string("Initial bricon range, e.g., -1:2.5"), false, requires_argument);
OptionParser imageOptions("", "image -l GreyScale -b 2.3,6");
imageOptions.add(lutname);
imageOptions.add(ibricon);
// ++a;
a += imageOptions.parse_command_line(argc - a, &(argv[a])) ;
cout << "imagename = " << imagename << endl;
cout << "lutname = " << lutname.value() << endl;
cout << "ibricon = " << ibricon.value().first << ", " << ibricon.value().second<< endl;
}
if(config_file.set())
options.parse_config_file(config_file.value());
if(help.value() ||
!options.check_compulsory_arguments(true))
options.usage();
if(verbose.value()) {
cout << "verbose = " << verbose.value() << endl;
cout << "help = " << help.value() << endl;
cout << "segid = " << segid.value() << endl;
cout << "dof = " << dof.value() << endl;
dof.set_T(50);
cout << "dof.set_T = " << dof.value() << endl;
cout << "mask = " << mask.value() << endl;
cout << "resid = " << resid.value() << endl;
cout << "noint = " << noint.value() << endl;
if(zopt.set()) cout << "zopt = " << zopt.value() << endl;
if(config_file.set()) cout << "config_file = " << config_file.value() << endl;
for(int i =0; i < (int)strseq.value().size(); i++)
cout << strseq.value().at(i) << endl;
cout << "popt = " << popt.value().first << ", " << popt.value().second<< endl;
cout << endl << endl;
} else {
for(int i =0; i < (int)strseq.value().size(); i++)
cout << strseq.value().at(i) << endl;
}
std::ofstream of("saved_config");
of << options << endl;
// cerr << verbose << endl;
// cerr << debugging << endl;
// cerr << help << endl;
// cerr << segid << endl;
// cerr << dof << endl;
// cerr << mask << endl;
// cerr << resid << endl;
// cerr << noint << endl;
// cerr << zopt << endl;
// cerr << strseq << endl;
// cerr << popt << endl;
} catch(X_OptionError& e) {
options.usage();
cerr << endl << "Exception:: " << e.what() << endl;
} catch(std::exception &e) {
cerr << e.what() << endl;
}
}
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