1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79
|
<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Strict//EN"
"http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd">
<html xmlns="http://www.w3.org/1999/xhtml" lang="en">
<head>
<title>GAMGI Interfaces: Atom Create</title>
<link rel="icon" type="image/png" href="../../icon/gamgi16.png"/>
<link rel="stylesheet" type="text/css" href="../../css/base.css"/>
<link rel="stylesheet" type="text/css" href="../../css/notebook.css"/>
</head>
<body>
<h1>Atom Create</h1>
<div id="notebook">
<ul>
<li><span>Element</span></li>
<li><a href="create_property.html">Property</a></li>
<li><a href="create_analysis.html">Analysis</a></li>
<li><a href="create_position.html">Position</a></li>
<li><a href="create_view.html">View</a></li>
</ul>
</div>
<div class="contents">
Set here the element and label of atom.
<h3>Element</h3>
Set here the element name, which can be <b>Si</b> but
not <b>si</b>, <b>S i</b> or <b>SI</b>. When a valid name is entered,
the element number is automatically set and default values are
suggested for the atom name, label, mass, radius and color. Choosing
a new element automatically changes these values to the new element.
Selecting non-default values for these parameters should therefore
be done only after setting the element.
<h3>Number</h3>
Set here the element number, which can vary between
0 (Du, a dummy atom) and 111 (Rg, currently the last element with
a two-letter symbol). When a valid number is entered,
the element name is automatically set and default values are
suggested for the atom name, label, mass, radius and color,
as described above.
<h3>Label</h3>
set here the atom label, commonly used in Molecular
Mechanics to distinguish atoms described by different inter-atomic
potentials. For example, methyl and hydroxyl hydrogen atoms in methanol
molecules might be described by "h3" and "ho" atom labels. Atom labels
can have a maximum of 10 characters, accepted characters are the
same as for atom names.
<h3>Table</h3>
Pressing <b>Table</b> pops up a second window, showing a Periodic
Table of the Elements, with a button for each element. When an element
button is clicked, default data is transported to the first window,
exactly as if the user had written the element name in the <b>Name</b>
entry or the element number in the <b>Number</b> entry.
<p/>
Pressing <b>Table</b> again (or clicking <b>Cancel</b> in the second
window, or using the Window Manager tools) closes the second window.
</div>
<div id="bottom">
<a href="../../index.shtml">Home</a>
</div>
</body>
</html>
|